miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19542 5' -60.8 NC_004685.1 + 134 0.67 0.472983
Target:  5'- gCGCgggCGCGGCugcCGGGGugGCCggGGa -3'
miRNA:   3'- gGCG---GCGCCGua-GCUCCugCGGagCU- -5'
19542 5' -60.8 NC_004685.1 + 441 0.66 0.551222
Target:  5'- -aGCCGCGGUcggUGAGGucgGCGCCaaagaugCGAu -3'
miRNA:   3'- ggCGGCGCCGua-GCUCC---UGCGGa------GCU- -5'
19542 5' -60.8 NC_004685.1 + 1275 0.66 0.531218
Target:  5'- gCGCgCGUGGCGcaUCGgacccGGGGCGCacaCUCGGa -3'
miRNA:   3'- gGCG-GCGCCGU--AGC-----UCCUGCG---GAGCU- -5'
19542 5' -60.8 NC_004685.1 + 1910 0.68 0.418141
Target:  5'- cCCGCUGCGGCcgCGGuuGGCGUCagCGGc -3'
miRNA:   3'- -GGCGGCGCCGuaGCUc-CUGCGGa-GCU- -5'
19542 5' -60.8 NC_004685.1 + 2576 0.71 0.266138
Target:  5'- gCGCCGCGccgaGCGUCGcaacGACaGCCUCGAg -3'
miRNA:   3'- gGCGGCGC----CGUAGCuc--CUG-CGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 3182 0.66 0.511484
Target:  5'- gCCGCCaaGGCGcggGAGGcGCGCCcCGAc -3'
miRNA:   3'- -GGCGGcgCCGUag-CUCC-UGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 4648 0.69 0.367345
Target:  5'- gUCGCCuaCGGCGUCGAGGAuggcgUGCCgUGGg -3'
miRNA:   3'- -GGCGGc-GCCGUAGCUCCU-----GCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 5171 0.7 0.299459
Target:  5'- aCCGCCGCGGCuggauuGUCGgcuGGGugGUgUCc- -3'
miRNA:   3'- -GGCGGCGCCG------UAGC---UCCugCGgAGcu -5'
19542 5' -60.8 NC_004685.1 + 6041 0.66 0.551222
Target:  5'- gUGuuGUGGCAUCGAGacgaGUCUCGu -3'
miRNA:   3'- gGCggCGCCGUAGCUCcug-CGGAGCu -5'
19542 5' -60.8 NC_004685.1 + 8175 0.69 0.359301
Target:  5'- gCCGCCGCgcacgaggccGGguUCGAGGAgGgCUCc- -3'
miRNA:   3'- -GGCGGCG----------CCguAGCUCCUgCgGAGcu -5'
19542 5' -60.8 NC_004685.1 + 8776 0.69 0.375511
Target:  5'- gCCGUCGUGGC-UUGAGGgcuugaagcucACGCCgCGGu -3'
miRNA:   3'- -GGCGGCGCCGuAGCUCC-----------UGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 9806 0.74 0.188716
Target:  5'- gCCGCCGCGGC---GAGGugGUCcCGGc -3'
miRNA:   3'- -GGCGGCGCCGuagCUCCugCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 10236 0.68 0.416379
Target:  5'- gCCGCCGgGGUGUCGGauuGGAUGCgggagaaguccaUCGAg -3'
miRNA:   3'- -GGCGGCgCCGUAGCU---CCUGCGg-----------AGCU- -5'
19542 5' -60.8 NC_004685.1 + 10534 0.8 0.071575
Target:  5'- cCCGCCGCGGC--CG-GGugGCUUCGAc -3'
miRNA:   3'- -GGCGGCGCCGuaGCuCCugCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 11176 0.71 0.266138
Target:  5'- aUCGCCGCGuGCAUCGAGcACGaugCGAu -3'
miRNA:   3'- -GGCGGCGC-CGUAGCUCcUGCggaGCU- -5'
19542 5' -60.8 NC_004685.1 + 11309 0.67 0.472983
Target:  5'- cCCGCCuGCGGgaGUCGuGGAUggGCCgugcgCGAc -3'
miRNA:   3'- -GGCGG-CGCCg-UAGCuCCUG--CGGa----GCU- -5'
19542 5' -60.8 NC_004685.1 + 12652 0.7 0.299459
Target:  5'- gCGCCGCGGCA-CGcGGcCGCUgUCGGa -3'
miRNA:   3'- gGCGGCGCCGUaGCuCCuGCGG-AGCU- -5'
19542 5' -60.8 NC_004685.1 + 13380 0.7 0.335917
Target:  5'- cUCGCCuCGGcCAUCGAGGACuGUC-CGGu -3'
miRNA:   3'- -GGCGGcGCC-GUAGCUCCUG-CGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 13539 0.66 0.521315
Target:  5'- aCCGaCCGCGGUcUUGAGGGucCGCaaccCGAa -3'
miRNA:   3'- -GGC-GGCGCCGuAGCUCCU--GCGga--GCU- -5'
19542 5' -60.8 NC_004685.1 + 14428 0.79 0.077593
Target:  5'- uCCGCCGCgaagcgcucGGCAUCuGGGACGCCagCGAg -3'
miRNA:   3'- -GGCGGCG---------CCGUAGcUCCUGCGGa-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.