miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19545 3' -54.5 NC_004685.1 + 25863 0.66 0.846974
Target:  5'- --cUGG-GCGAgcgGCCCGcgcaggUCGGGGcgGCCg -3'
miRNA:   3'- uaaACUgCGCUa--UGGGC------AGCCCC--UGG- -5'
19545 3' -54.5 NC_004685.1 + 38675 0.66 0.846974
Target:  5'- ---cGugGUGGgcguCCUGgaGGGGACCa -3'
miRNA:   3'- uaaaCugCGCUau--GGGCagCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 60998 0.66 0.838424
Target:  5'- ---aGuACGCGcgGCCC-UCGGGGugaaucgacgGCCa -3'
miRNA:   3'- uaaaC-UGCGCuaUGGGcAGCCCC----------UGG- -5'
19545 3' -54.5 NC_004685.1 + 7165 0.66 0.838424
Target:  5'- --gUGGCcaucGCGGUguccgAgCCGUCGGGaGGCCc -3'
miRNA:   3'- uaaACUG----CGCUA-----UgGGCAGCCC-CUGG- -5'
19545 3' -54.5 NC_004685.1 + 11101 0.66 0.829663
Target:  5'- ---gGGCGCGAcGCCgagaCGUUGGGcaucGACCu -3'
miRNA:   3'- uaaaCUGCGCUaUGG----GCAGCCC----CUGG- -5'
19545 3' -54.5 NC_004685.1 + 49840 0.66 0.829663
Target:  5'- -cUUGcCGaCGAgccGCCCaccgucaugGUUGGGGGCCg -3'
miRNA:   3'- uaAACuGC-GCUa--UGGG---------CAGCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 61294 0.66 0.81155
Target:  5'- ---aGGCacaGGUugCCGUCGGGGuACa -3'
miRNA:   3'- uaaaCUGcg-CUAugGGCAGCCCC-UGg -5'
19545 3' -54.5 NC_004685.1 + 61469 0.67 0.79271
Target:  5'- ---cGACGCuGUugUCGUCGGGcAUCa -3'
miRNA:   3'- uaaaCUGCGcUAugGGCAGCCCcUGG- -5'
19545 3' -54.5 NC_004685.1 + 53705 0.67 0.783042
Target:  5'- ---cGACGCGGaACCgGaUGGGGuaGCCg -3'
miRNA:   3'- uaaaCUGCGCUaUGGgCaGCCCC--UGG- -5'
19545 3' -54.5 NC_004685.1 + 14689 0.67 0.773224
Target:  5'- ---cGAgGCGGUGCCCGa-GGaGGGCa -3'
miRNA:   3'- uaaaCUgCGCUAUGGGCagCC-CCUGg -5'
19545 3' -54.5 NC_004685.1 + 17358 0.67 0.767264
Target:  5'- ---gGGCGCGGcaacugGCCCGcUacuacggcguccggcUGGGGACCa -3'
miRNA:   3'- uaaaCUGCGCUa-----UGGGC-A---------------GCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 60043 0.67 0.763264
Target:  5'- ---gGugGCGucGCCCuUCGGGGugGCCc -3'
miRNA:   3'- uaaaCugCGCuaUGGGcAGCCCC--UGG- -5'
19545 3' -54.5 NC_004685.1 + 56157 0.67 0.763264
Target:  5'- ---aGAcCGCGGUcgguGCCuCGUCGGGGcgguCCc -3'
miRNA:   3'- uaaaCU-GCGCUA----UGG-GCAGCCCCu---GG- -5'
19545 3' -54.5 NC_004685.1 + 68556 0.67 0.753174
Target:  5'- ---cGAUGCGGgcGCCCcgaugcGUCGGGGugUu -3'
miRNA:   3'- uaaaCUGCGCUa-UGGG------CAGCCCCugG- -5'
19545 3' -54.5 NC_004685.1 + 61259 0.68 0.742966
Target:  5'- ---cGACGuCGAUGCcgaccacaCCGUCGGGcaGCCg -3'
miRNA:   3'- uaaaCUGC-GCUAUG--------GGCAGCCCc-UGG- -5'
19545 3' -54.5 NC_004685.1 + 47682 0.68 0.732649
Target:  5'- --gUGAUGCGGUcgauuucgGCCgCGgcuuuggCGGGGACUu -3'
miRNA:   3'- uaaACUGCGCUA--------UGG-GCa------GCCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 41018 0.68 0.722236
Target:  5'- ---cGACGCGAUcgaacGCCCGcgUCaGGGAUg -3'
miRNA:   3'- uaaaCUGCGCUA-----UGGGC--AGcCCCUGg -5'
19545 3' -54.5 NC_004685.1 + 53544 0.68 0.70116
Target:  5'- --cUGGCGCGGcGCggCCGacuccaGGGGACCg -3'
miRNA:   3'- uaaACUGCGCUaUG--GGCag----CCCCUGG- -5'
19545 3' -54.5 NC_004685.1 + 8380 0.68 0.690519
Target:  5'- --gUGAUGUGGgaucgcaccgACCUGUCGuGGGACg -3'
miRNA:   3'- uaaACUGCGCUa---------UGGGCAGC-CCCUGg -5'
19545 3' -54.5 NC_004685.1 + 13127 0.69 0.647518
Target:  5'- --aUGAUGCGc-GCCCGggcgacgCGGaGGGCCg -3'
miRNA:   3'- uaaACUGCGCuaUGGGCa------GCC-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.