miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19558 3' -58.8 NC_004686.1 + 32727 0.66 0.568959
Target:  5'- cGUUCGAGCGcuggaaGAUGCUuccuucucccuuugcUCGGgGUGGGCg -3'
miRNA:   3'- -CGGGCUUGC------CUGCGA---------------AGCCgCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 21472 0.66 0.564768
Target:  5'- aGUCUGGu--GAUGUUUCGGCGUugucgGGGCg -3'
miRNA:   3'- -CGGGCUugcCUGCGAAGCCGCG-----UCCG- -5'
19558 3' -58.8 NC_004686.1 + 52874 0.66 0.564768
Target:  5'- gGUCgGAAugaaacguCGGGCGCcaggaucaugCGGCGCAuGGCu -3'
miRNA:   3'- -CGGgCUU--------GCCUGCGaa--------GCCGCGU-CCG- -5'
19558 3' -58.8 NC_004686.1 + 39165 0.66 0.554326
Target:  5'- uGCUCGAaugagugccgACGGGCGCagaGGUG-GGGCg -3'
miRNA:   3'- -CGGGCU----------UGCCUGCGaagCCGCgUCCG- -5'
19558 3' -58.8 NC_004686.1 + 791 0.66 0.554326
Target:  5'- uGCCCGGuAUGGGgauugUGCUcgaUCGGUgGCAGGa -3'
miRNA:   3'- -CGGGCU-UGCCU-----GCGA---AGCCG-CGUCCg -5'
19558 3' -58.8 NC_004686.1 + 15438 0.66 0.553285
Target:  5'- aCCCGGAagaagcauuucugUGGAUGCUggUGGCGU-GGCc -3'
miRNA:   3'- cGGGCUU-------------GCCUGCGAa-GCCGCGuCCG- -5'
19558 3' -58.8 NC_004686.1 + 19009 0.66 0.543941
Target:  5'- aGCCgaagUGGGCGaACGCguuugaccugUUCGGUGUGGGCg -3'
miRNA:   3'- -CGG----GCUUGCcUGCG----------AAGCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 10326 0.66 0.543941
Target:  5'- aGCCUGAugGG-CGCUgacccaguuauUCagguuguccagGGCGguGGUg -3'
miRNA:   3'- -CGGGCUugCCuGCGA-----------AG-----------CCGCguCCG- -5'
19558 3' -58.8 NC_004686.1 + 38760 0.66 0.533621
Target:  5'- aCCCcc-UGGuuCGCUaggUGGCGCGGGCa -3'
miRNA:   3'- cGGGcuuGCCu-GCGAa--GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 27460 0.67 0.523371
Target:  5'- cGCCgCGccaaGGACGCUaUCuGuGCGUGGGCa -3'
miRNA:   3'- -CGG-GCuug-CCUGCGA-AG-C-CGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 51508 0.67 0.523371
Target:  5'- uGCUCGuguGgGGGCGUggaucgCGGCGUGGGa -3'
miRNA:   3'- -CGGGCu--UgCCUGCGaa----GCCGCGUCCg -5'
19558 3' -58.8 NC_004686.1 + 39762 0.67 0.513198
Target:  5'- cGCCUccuacACGGACGCcgCGGCGacggugGGGUg -3'
miRNA:   3'- -CGGGcu---UGCCUGCGaaGCCGCg-----UCCG- -5'
19558 3' -58.8 NC_004686.1 + 55061 0.67 0.513198
Target:  5'- gGUuuGuGCGGugGCg-CGGuUGUAGGCg -3'
miRNA:   3'- -CGggCuUGCCugCGaaGCC-GCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 22226 0.67 0.510161
Target:  5'- gGCCaGAgcagaaccaacggcGCGGGCGCUggCGGUaaGGGCg -3'
miRNA:   3'- -CGGgCU--------------UGCCUGCGAa-GCCGcgUCCG- -5'
19558 3' -58.8 NC_004686.1 + 8988 0.67 0.503106
Target:  5'- gGUCCauccGCGGGCGaggaggUCGGCGCGgauGGCc -3'
miRNA:   3'- -CGGGcu--UGCCUGCga----AGCCGCGU---CCG- -5'
19558 3' -58.8 NC_004686.1 + 45810 0.67 0.493103
Target:  5'- gGCCuUGGguGCGGGaGCaUUCGGCGCAaGCa -3'
miRNA:   3'- -CGG-GCU--UGCCUgCG-AAGCCGCGUcCG- -5'
19558 3' -58.8 NC_004686.1 + 43053 0.67 0.483191
Target:  5'- aGCCCGu-UGGACGCcacgUUGGUGUcuucgcGGCg -3'
miRNA:   3'- -CGGGCuuGCCUGCGa---AGCCGCGu-----CCG- -5'
19558 3' -58.8 NC_004686.1 + 47503 0.67 0.473376
Target:  5'- gGUgCGAACGGGaGaCUUCGGCggaGCGGGa -3'
miRNA:   3'- -CGgGCUUGCCUgC-GAAGCCG---CGUCCg -5'
19558 3' -58.8 NC_004686.1 + 22665 0.68 0.444555
Target:  5'- gGCCCGcaucaucgaaccGGCGGcaGCGUUcaUCGGUGUaucGGGCg -3'
miRNA:   3'- -CGGGC------------UUGCC--UGCGA--AGCCGCG---UCCG- -5'
19558 3' -58.8 NC_004686.1 + 3382 0.68 0.43891
Target:  5'- aUgCGAagugGCGGGaucCGCgguaucugucgaagUCGGCGCAGGCu -3'
miRNA:   3'- cGgGCU----UGCCU---GCGa-------------AGCCGCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.