Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19558 | 3' | -58.8 | NC_004686.1 | + | 791 | 0.66 | 0.554326 |
Target: 5'- uGCCCGGuAUGGGgauugUGCUcgaUCGGUgGCAGGa -3' miRNA: 3'- -CGGGCU-UGCCU-----GCGA---AGCCG-CGUCCg -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 1450 | 0.7 | 0.332193 |
Target: 5'- cCuuGAACGGACGCUUCuucaccGGCGCcaaaGCc -3' miRNA: 3'- cGggCUUGCCUGCGAAG------CCGCGuc--CG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 2126 | 0.69 | 0.406817 |
Target: 5'- cGCCCGucUGGgaacagucgcgcaACGCaUCGGCGUAagcGGCa -3' miRNA: 3'- -CGGGCuuGCC-------------UGCGaAGCCGCGU---CCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 2910 | 1.12 | 0.000301 |
Target: 5'- uGCCCGAACGGACGCUUCGGCGCAGGCu -3' miRNA: 3'- -CGGGCUUGCCUGCGAAGCCGCGUCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 3161 | 0.72 | 0.266806 |
Target: 5'- cGCCCGugaGGcguCGCUUccggauaCGGCGguGGCg -3' miRNA: 3'- -CGGGCuugCCu--GCGAA-------GCCGCguCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 3382 | 0.68 | 0.43891 |
Target: 5'- aUgCGAagugGCGGGaucCGCgguaucugucgaagUCGGCGCAGGCu -3' miRNA: 3'- cGgGCU----UGCCU---GCGa-------------AGCCGCGUCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 3610 | 0.7 | 0.324464 |
Target: 5'- gGCCCuGAACGcGGCGUUugUCGGC-CAuGGCc -3' miRNA: 3'- -CGGG-CUUGC-CUGCGA--AGCCGcGU-CCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 5913 | 0.72 | 0.242134 |
Target: 5'- cGUCUGGcCGGugGCUaUCGGCuGCcGGCg -3' miRNA: 3'- -CGGGCUuGCCugCGA-AGCCG-CGuCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 8988 | 0.67 | 0.503106 |
Target: 5'- gGUCCauccGCGGGCGaggaggUCGGCGCGgauGGCc -3' miRNA: 3'- -CGGGcu--UGCCUGCga----AGCCGCGU---CCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 10326 | 0.66 | 0.543941 |
Target: 5'- aGCCUGAugGG-CGCUgacccaguuauUCagguuguccagGGCGguGGUg -3' miRNA: 3'- -CGGGCUugCCuGCGA-----------AG-----------CCGCguCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 11035 | 0.68 | 0.425898 |
Target: 5'- gGUCCGAuCGGugGCccCGGCccgaaGGGCa -3' miRNA: 3'- -CGGGCUuGCCugCGaaGCCGcg---UCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 12129 | 0.75 | 0.173355 |
Target: 5'- -gCCGcaacGGCGGGCaGUUUCGGCGCcGGCg -3' miRNA: 3'- cgGGC----UUGCCUG-CGAAGCCGCGuCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 12520 | 0.7 | 0.348054 |
Target: 5'- uGCCCuGAU-GugGCaUCGGCGgAGGCu -3' miRNA: 3'- -CGGGcUUGcCugCGaAGCCGCgUCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 15438 | 0.66 | 0.553285 |
Target: 5'- aCCCGGAagaagcauuucugUGGAUGCUggUGGCGU-GGCc -3' miRNA: 3'- cGGGCUU-------------GCCUGCGAa-GCCGCGuCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 15673 | 0.72 | 0.235528 |
Target: 5'- uGCCCGcgauGCGGugGCc-CGGCugacgccgcagcaGCAGGCc -3' miRNA: 3'- -CGGGCu---UGCCugCGaaGCCG-------------CGUCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 19009 | 0.66 | 0.543941 |
Target: 5'- aGCCgaagUGGGCGaACGCguuugaccugUUCGGUGUGGGCg -3' miRNA: 3'- -CGG----GCUUGCcUGCG----------AAGCCGCGUCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 21472 | 0.66 | 0.564768 |
Target: 5'- aGUCUGGu--GAUGUUUCGGCGUugucgGGGCg -3' miRNA: 3'- -CGGGCUugcCUGCGAAGCCGCG-----UCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 21831 | 0.76 | 0.147905 |
Target: 5'- cGCCUcGGCGG-CGCg--GGCGCGGGCg -3' miRNA: 3'- -CGGGcUUGCCuGCGaagCCGCGUCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 21870 | 0.71 | 0.280913 |
Target: 5'- cGCUCGAACuccgGGuauCGCUacggcggCGGCGguGGCg -3' miRNA: 3'- -CGGGCUUG----CCu--GCGAa------GCCGCguCCG- -5' |
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19558 | 3' | -58.8 | NC_004686.1 | + | 21953 | 0.7 | 0.343239 |
Target: 5'- aGgCCGAcguacucaacgacgcGCGGACuCggCGGCGCuGGCg -3' miRNA: 3'- -CgGGCU---------------UGCCUGcGaaGCCGCGuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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