miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19558 3' -58.8 NC_004686.1 + 55061 0.67 0.513198
Target:  5'- gGUuuGuGCGGugGCg-CGGuUGUAGGCg -3'
miRNA:   3'- -CGggCuUGCCugCGaaGCC-GCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 52874 0.66 0.564768
Target:  5'- gGUCgGAAugaaacguCGGGCGCcaggaucaugCGGCGCAuGGCu -3'
miRNA:   3'- -CGGgCUU--------GCCUGCGaa--------GCCGCGU-CCG- -5'
19558 3' -58.8 NC_004686.1 + 51508 0.67 0.523371
Target:  5'- uGCUCGuguGgGGGCGUggaucgCGGCGUGGGa -3'
miRNA:   3'- -CGGGCu--UgCCUGCGaa----GCCGCGUCCg -5'
19558 3' -58.8 NC_004686.1 + 51246 0.68 0.432375
Target:  5'- aGCCaCGAACGGcuaagcggcccggaAUGUcacugCGGCGCGGGa -3'
miRNA:   3'- -CGG-GCUUGCC--------------UGCGaa---GCCGCGUCCg -5'
19558 3' -58.8 NC_004686.1 + 47806 0.79 0.083515
Target:  5'- --gCGGcuACGGGCGCUUUGGCGCGGGg -3'
miRNA:   3'- cggGCU--UGCCUGCGAAGCCGCGUCCg -5'
19558 3' -58.8 NC_004686.1 + 47503 0.67 0.473376
Target:  5'- gGUgCGAACGGGaGaCUUCGGCggaGCGGGa -3'
miRNA:   3'- -CGgGCUUGCCUgC-GAAGCCG---CGUCCg -5'
19558 3' -58.8 NC_004686.1 + 47415 0.69 0.407714
Target:  5'- cGCCUcGACGGugGCgcggUUCGGCuGCGGa- -3'
miRNA:   3'- -CGGGcUUGCCugCG----AAGCCG-CGUCcg -5'
19558 3' -58.8 NC_004686.1 + 46939 0.73 0.202639
Target:  5'- gGUCCGGGCGGugGC-UCGGgcggaaGCGGGa -3'
miRNA:   3'- -CGGGCUUGCCugCGaAGCCg-----CGUCCg -5'
19558 3' -58.8 NC_004686.1 + 45810 0.67 0.493103
Target:  5'- gGCCuUGGguGCGGGaGCaUUCGGCGCAaGCa -3'
miRNA:   3'- -CGG-GCU--UGCCUgCG-AAGCCGCGUcCG- -5'
19558 3' -58.8 NC_004686.1 + 43053 0.67 0.483191
Target:  5'- aGCCCGu-UGGACGCcacgUUGGUGUcuucgcGGCg -3'
miRNA:   3'- -CGGGCuuGCCUGCGa---AGCCGCGu-----CCG- -5'
19558 3' -58.8 NC_004686.1 + 42755 0.7 0.332193
Target:  5'- gGUCCu-ACGGuucaggagGCGUUggCGGCGCGGGCu -3'
miRNA:   3'- -CGGGcuUGCC--------UGCGAa-GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 40116 0.73 0.218834
Target:  5'- uGUCCGAGCGuGaACGCcgaccacUGGUGCAGGCu -3'
miRNA:   3'- -CGGGCUUGC-C-UGCGaa-----GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 39762 0.67 0.513198
Target:  5'- cGCCUccuacACGGACGCcgCGGCGacggugGGGUg -3'
miRNA:   3'- -CGGGcu---UGCCUGCGaaGCCGCg-----UCCG- -5'
19558 3' -58.8 NC_004686.1 + 39395 0.68 0.425898
Target:  5'- aCCCGucuucgcGCGGgcACGCUgcacggugCGGUGguGGCa -3'
miRNA:   3'- cGGGCu------UGCC--UGCGAa-------GCCGCguCCG- -5'
19558 3' -58.8 NC_004686.1 + 39165 0.66 0.554326
Target:  5'- uGCUCGAaugagugccgACGGGCGCagaGGUG-GGGCg -3'
miRNA:   3'- -CGGGCU----------UGCCUGCGaagCCGCgUCCG- -5'
19558 3' -58.8 NC_004686.1 + 38760 0.66 0.533621
Target:  5'- aCCCcc-UGGuuCGCUaggUGGCGCGGGCa -3'
miRNA:   3'- cGGGcuuGCCu-GCGAa--GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 37206 0.71 0.274123
Target:  5'- aCCCGucuCGGugGgUgacauugguccCGGCGCGGGCa -3'
miRNA:   3'- cGGGCuu-GCCugCgAa----------GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 32727 0.66 0.568959
Target:  5'- cGUUCGAGCGcuggaaGAUGCUuccuucucccuuugcUCGGgGUGGGCg -3'
miRNA:   3'- -CGGGCUUGC------CUGCGA---------------AGCCgCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 27460 0.67 0.523371
Target:  5'- cGCCgCGccaaGGACGCUaUCuGuGCGUGGGCa -3'
miRNA:   3'- -CGG-GCuug-CCUGCGA-AG-C-CGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 25542 0.73 0.207918
Target:  5'- aGCCaUGuguCGGACGCggaggUCGGCGacaAGGCu -3'
miRNA:   3'- -CGG-GCuu-GCCUGCGa----AGCCGCg--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.