miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19558 3' -58.8 NC_004686.1 + 27460 0.67 0.523371
Target:  5'- cGCCgCGccaaGGACGCUaUCuGuGCGUGGGCa -3'
miRNA:   3'- -CGG-GCuug-CCUGCGA-AG-C-CGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 11035 0.68 0.425898
Target:  5'- gGUCCGAuCGGugGCccCGGCccgaaGGGCa -3'
miRNA:   3'- -CGGGCUuGCCugCGaaGCCGcg---UCCG- -5'
19558 3' -58.8 NC_004686.1 + 51246 0.68 0.432375
Target:  5'- aGCCaCGAACGGcuaagcggcccggaAUGUcacugCGGCGCGGGa -3'
miRNA:   3'- -CGG-GCUUGCC--------------UGCGaa---GCCGCGUCCg -5'
19558 3' -58.8 NC_004686.1 + 3382 0.68 0.43891
Target:  5'- aUgCGAagugGCGGGaucCGCgguaucugucgaagUCGGCGCAGGCu -3'
miRNA:   3'- cGgGCU----UGCCU---GCGa-------------AGCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 22665 0.68 0.444555
Target:  5'- gGCCCGcaucaucgaaccGGCGGcaGCGUUcaUCGGUGUaucGGGCg -3'
miRNA:   3'- -CGGGC------------UUGCC--UGCGA--AGCCGCG---UCCG- -5'
19558 3' -58.8 NC_004686.1 + 47503 0.67 0.473376
Target:  5'- gGUgCGAACGGGaGaCUUCGGCggaGCGGGa -3'
miRNA:   3'- -CGgGCUUGCCUgC-GAAGCCG---CGUCCg -5'
19558 3' -58.8 NC_004686.1 + 22226 0.67 0.510161
Target:  5'- gGCCaGAgcagaaccaacggcGCGGGCGCUggCGGUaaGGGCg -3'
miRNA:   3'- -CGGgCU--------------UGCCUGCGAa-GCCGcgUCCG- -5'
19558 3' -58.8 NC_004686.1 + 39762 0.67 0.513198
Target:  5'- cGCCUccuacACGGACGCcgCGGCGacggugGGGUg -3'
miRNA:   3'- -CGGGcu---UGCCUGCGaaGCCGCg-----UCCG- -5'
19558 3' -58.8 NC_004686.1 + 51508 0.67 0.523371
Target:  5'- uGCUCGuguGgGGGCGUggaucgCGGCGUGGGa -3'
miRNA:   3'- -CGGGCu--UgCCUGCGaa----GCCGCGUCCg -5'
19558 3' -58.8 NC_004686.1 + 2126 0.69 0.406817
Target:  5'- cGCCCGucUGGgaacagucgcgcaACGCaUCGGCGUAagcGGCa -3'
miRNA:   3'- -CGGGCuuGCC-------------UGCGaAGCCGCGU---CCG- -5'
19558 3' -58.8 NC_004686.1 + 21953 0.7 0.343239
Target:  5'- aGgCCGAcguacucaacgacgcGCGGACuCggCGGCGCuGGCg -3'
miRNA:   3'- -CgGGCU---------------UGCCUGcGaaGCCGCGuCCG- -5'
19558 3' -58.8 NC_004686.1 + 42755 0.7 0.332193
Target:  5'- gGUCCu-ACGGuucaggagGCGUUggCGGCGCGGGCu -3'
miRNA:   3'- -CGGGcuUGCC--------UGCGAa-GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 21831 0.76 0.147905
Target:  5'- cGCCUcGGCGG-CGCg--GGCGCGGGCg -3'
miRNA:   3'- -CGGGcUUGCCuGCGaagCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 12129 0.75 0.173355
Target:  5'- -gCCGcaacGGCGGGCaGUUUCGGCGCcGGCg -3'
miRNA:   3'- cgGGC----UUGCCUG-CGAAGCCGCGuCCG- -5'
19558 3' -58.8 NC_004686.1 + 40116 0.73 0.218834
Target:  5'- uGUCCGAGCGuGaACGCcgaccacUGGUGCAGGCu -3'
miRNA:   3'- -CGGGCUUGC-C-UGCGaa-----GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 15673 0.72 0.235528
Target:  5'- uGCCCGcgauGCGGugGCc-CGGCugacgccgcagcaGCAGGCc -3'
miRNA:   3'- -CGGGCu---UGCCugCGaaGCCG-------------CGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 5913 0.72 0.242134
Target:  5'- cGUCUGGcCGGugGCUaUCGGCuGCcGGCg -3'
miRNA:   3'- -CGGGCUuGCCugCGA-AGCCG-CGuCCG- -5'
19558 3' -58.8 NC_004686.1 + 3161 0.72 0.266806
Target:  5'- cGCCCGugaGGcguCGCUUccggauaCGGCGguGGCg -3'
miRNA:   3'- -CGGGCuugCCu--GCGAA-------GCCGCguCCG- -5'
19558 3' -58.8 NC_004686.1 + 37206 0.71 0.274123
Target:  5'- aCCCGucuCGGugGgUgacauugguccCGGCGCGGGCa -3'
miRNA:   3'- cGGGCuu-GCCugCgAa----------GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 21870 0.71 0.280913
Target:  5'- cGCUCGAACuccgGGuauCGCUacggcggCGGCGguGGCg -3'
miRNA:   3'- -CGGGCUUG----CCu--GCGAa------GCCGCguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.