miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19558 3' -58.8 NC_004686.1 + 2910 1.12 0.000301
Target:  5'- uGCCCGAACGGACGCUUCGGCGCAGGCu -3'
miRNA:   3'- -CGGGCUUGCCUGCGAAGCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 55061 0.67 0.513198
Target:  5'- gGUuuGuGCGGugGCg-CGGuUGUAGGCg -3'
miRNA:   3'- -CGggCuUGCCugCGaaGCC-GCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 43053 0.67 0.483191
Target:  5'- aGCCCGu-UGGACGCcacgUUGGUGUcuucgcGGCg -3'
miRNA:   3'- -CGGGCuuGCCUGCGa---AGCCGCGu-----CCG- -5'
19558 3' -58.8 NC_004686.1 + 39395 0.68 0.425898
Target:  5'- aCCCGucuucgcGCGGgcACGCUgcacggugCGGUGguGGCa -3'
miRNA:   3'- cGGGCu------UGCC--UGCGAa-------GCCGCguCCG- -5'
19558 3' -58.8 NC_004686.1 + 12520 0.7 0.348054
Target:  5'- uGCCCuGAU-GugGCaUCGGCGgAGGCu -3'
miRNA:   3'- -CGGGcUUGcCugCGaAGCCGCgUCCG- -5'
19558 3' -58.8 NC_004686.1 + 1450 0.7 0.332193
Target:  5'- cCuuGAACGGACGCUUCuucaccGGCGCcaaaGCc -3'
miRNA:   3'- cGggCUUGCCUGCGAAG------CCGCGuc--CG- -5'
19558 3' -58.8 NC_004686.1 + 10326 0.66 0.543941
Target:  5'- aGCCUGAugGG-CGCUgacccaguuauUCagguuguccagGGCGguGGUg -3'
miRNA:   3'- -CGGGCUugCCuGCGA-----------AG-----------CCGCguCCG- -5'
19558 3' -58.8 NC_004686.1 + 8988 0.67 0.503106
Target:  5'- gGUCCauccGCGGGCGaggaggUCGGCGCGgauGGCc -3'
miRNA:   3'- -CGGGcu--UGCCUGCga----AGCCGCGU---CCG- -5'
19558 3' -58.8 NC_004686.1 + 47415 0.69 0.407714
Target:  5'- cGCCUcGACGGugGCgcggUUCGGCuGCGGa- -3'
miRNA:   3'- -CGGGcUUGCCugCG----AAGCCG-CGUCcg -5'
19558 3' -58.8 NC_004686.1 + 3610 0.7 0.324464
Target:  5'- gGCCCuGAACGcGGCGUUugUCGGC-CAuGGCc -3'
miRNA:   3'- -CGGG-CUUGC-CUGCGA--AGCCGcGU-CCG- -5'
19558 3' -58.8 NC_004686.1 + 46939 0.73 0.202639
Target:  5'- gGUCCGGGCGGugGC-UCGGgcggaaGCGGGa -3'
miRNA:   3'- -CGGGCUUGCCugCGaAGCCg-----CGUCCg -5'
19558 3' -58.8 NC_004686.1 + 25542 0.73 0.207918
Target:  5'- aGCCaUGuguCGGACGCggaggUCGGCGacaAGGCu -3'
miRNA:   3'- -CGG-GCuu-GCCUGCGa----AGCCGCg--UCCG- -5'
19558 3' -58.8 NC_004686.1 + 45810 0.67 0.493103
Target:  5'- gGCCuUGGguGCGGGaGCaUUCGGCGCAaGCa -3'
miRNA:   3'- -CGG-GCU--UGCCUgCG-AAGCCGCGUcCG- -5'
19558 3' -58.8 NC_004686.1 + 38760 0.66 0.533621
Target:  5'- aCCCcc-UGGuuCGCUaggUGGCGCGGGCa -3'
miRNA:   3'- cGGGcuuGCCu-GCGAa--GCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 3382 0.68 0.43891
Target:  5'- aUgCGAagugGCGGGaucCGCgguaucugucgaagUCGGCGCAGGCu -3'
miRNA:   3'- cGgGCU----UGCCU---GCGa-------------AGCCGCGUCCG- -5'
19558 3' -58.8 NC_004686.1 + 51246 0.68 0.432375
Target:  5'- aGCCaCGAACGGcuaagcggcccggaAUGUcacugCGGCGCGGGa -3'
miRNA:   3'- -CGG-GCUUGCC--------------UGCGaa---GCCGCGUCCg -5'
19558 3' -58.8 NC_004686.1 + 11035 0.68 0.425898
Target:  5'- gGUCCGAuCGGugGCccCGGCccgaaGGGCa -3'
miRNA:   3'- -CGGGCUuGCCugCGaaGCCGcg---UCCG- -5'
19558 3' -58.8 NC_004686.1 + 2126 0.69 0.406817
Target:  5'- cGCCCGucUGGgaacagucgcgcaACGCaUCGGCGUAagcGGCa -3'
miRNA:   3'- -CGGGCuuGCC-------------UGCGaAGCCGCGU---CCG- -5'
19558 3' -58.8 NC_004686.1 + 12129 0.75 0.173355
Target:  5'- -gCCGcaacGGCGGGCaGUUUCGGCGCcGGCg -3'
miRNA:   3'- cgGGC----UUGCCUG-CGAAGCCGCGuCCG- -5'
19558 3' -58.8 NC_004686.1 + 3161 0.72 0.266806
Target:  5'- cGCCCGugaGGcguCGCUUccggauaCGGCGguGGCg -3'
miRNA:   3'- -CGGGCuugCCu--GCGAA-------GCCGCguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.