Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19561 | 3' | -62.5 | NC_004686.1 | + | 3528 | 1.05 | 0.000325 |
Target: 5'- cUCCGCAAGCCACGGCACCGCCGCCAAc -3' miRNA: 3'- -AGGCGUUCGGUGCCGUGGCGGCGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 55208 | 0.77 | 0.048622 |
Target: 5'- aCCGCAAGuCCAuCGGCGCCGucaacaucgucucCCGCCAAu -3' miRNA: 3'- aGGCGUUC-GGU-GCCGUGGC-------------GGCGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 6403 | 0.77 | 0.056133 |
Target: 5'- cCCGCAGGCCACGGUGUCGaCCGCgAAg -3' miRNA: 3'- aGGCGUUCGGUGCCGUGGC-GGCGgUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 29208 | 0.77 | 0.056133 |
Target: 5'- aUCCGCAAG-CGCGGC-CCGCCgacGCCGAu -3' miRNA: 3'- -AGGCGUUCgGUGCCGuGGCGG---CGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 22128 | 0.74 | 0.090152 |
Target: 5'- -gCGCGcgcGGCCucgGCGGCACCGCUGUCAu -3' miRNA: 3'- agGCGU---UCGG---UGCCGUGGCGGCGGUu -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 21311 | 0.73 | 0.109248 |
Target: 5'- aUCCGUAcGCCGuggcccaGGCACCGCUGCUGAc -3' miRNA: 3'- -AGGCGUuCGGUg------CCGUGGCGGCGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 42934 | 0.73 | 0.109248 |
Target: 5'- aCCGCAGGCCccgggcucucgGCGGCucUCGCCGCgAAg -3' miRNA: 3'- aGGCGUUCGG-----------UGCCGu-GGCGGCGgUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 3983 | 0.72 | 0.125145 |
Target: 5'- aUCCGCAGGCCGCGGaUACaUGCgGCgCAc -3' miRNA: 3'- -AGGCGUUCGGUGCC-GUG-GCGgCG-GUu -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 12237 | 0.72 | 0.125145 |
Target: 5'- gCCGCuGGCCccGCGGCcugACCGCCggcGCCGAa -3' miRNA: 3'- aGGCGuUCGG--UGCCG---UGGCGG---CGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 14608 | 0.71 | 0.147042 |
Target: 5'- aCCGCAuuugacggacuGGCC-C-GCACCGUCGCCGAg -3' miRNA: 3'- aGGCGU-----------UCGGuGcCGUGGCGGCGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 8008 | 0.71 | 0.14862 |
Target: 5'- aUCGCAAGaUCACgauccgucacgaugaGGCGCCGCUGCCGc -3' miRNA: 3'- aGGCGUUC-GGUG---------------CCGUGGCGGCGGUu -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 3541 | 0.71 | 0.155086 |
Target: 5'- gCCGCGuucagGGCCGCGGCA-CGCUGCa-- -3' miRNA: 3'- aGGCGU-----UCGGUGCCGUgGCGGCGguu -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 18990 | 0.71 | 0.159256 |
Target: 5'- aCgGCGAGuucaauCCACGGCACCuUCGCCGAa -3' miRNA: 3'- aGgCGUUC------GGUGCCGUGGcGGCGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 29937 | 0.7 | 0.163527 |
Target: 5'- -gUGCucGGCCugauCGGCaaGCCGCCGCCAc -3' miRNA: 3'- agGCGu-UCGGu---GCCG--UGGCGGCGGUu -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 25655 | 0.7 | 0.1679 |
Target: 5'- aCCGCAGGCCgGCGG-ACuCGUgGCCGAu -3' miRNA: 3'- aGGCGUUCGG-UGCCgUG-GCGgCGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 12442 | 0.7 | 0.171925 |
Target: 5'- cUCCGCcgauGCCACaucagggcaauggGGCACCGCCGggaCCGGg -3' miRNA: 3'- -AGGCGuu--CGGUG-------------CCGUGGCGGC---GGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 22294 | 0.7 | 0.172378 |
Target: 5'- uUCUGCucuGGCCAUugguugGGCuGCUGCCGCCGu -3' miRNA: 3'- -AGGCGu--UCGGUG------CCG-UGGCGGCGGUu -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 22824 | 0.7 | 0.176962 |
Target: 5'- aCCGCGauAGCCGCGGCGCCGgggGUUAGg -3' miRNA: 3'- aGGCGU--UCGGUGCCGUGGCgg-CGGUU- -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 21972 | 0.7 | 0.181655 |
Target: 5'- aCCGCcaccGCCAC--CGCCGCCGCCGu -3' miRNA: 3'- aGGCGuu--CGGUGccGUGGCGGCGGUu -5' |
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19561 | 3' | -62.5 | NC_004686.1 | + | 21925 | 0.7 | 0.186457 |
Target: 5'- gCCGUccgGAGCCGCcgcccGCGCCcgcGCCGCCGAg -3' miRNA: 3'- aGGCG---UUCGGUGc----CGUGG---CGGCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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