miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19561 3' -62.5 NC_004686.1 + 34732 0.67 0.277486
Target:  5'- gUUCGCcGGCUACGGCaACCGCaaggaacgucucuaCGCCu- -3'
miRNA:   3'- -AGGCGuUCGGUGCCG-UGGCG--------------GCGGuu -5'
19561 3' -62.5 NC_004686.1 + 49677 0.68 0.223288
Target:  5'- gCCGCGAGCaCGCaGCGCaUGUgGCCGAg -3'
miRNA:   3'- aGGCGUUCG-GUGcCGUG-GCGgCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 24440 0.68 0.223288
Target:  5'- gCUGCGugaagcGCUGCGGCgGCgGCCGCCAc -3'
miRNA:   3'- aGGCGUu-----CGGUGCCG-UGgCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 35155 0.68 0.234893
Target:  5'- aUCCGUAAGaCCGgugGGUA-CGCCGCCGAu -3'
miRNA:   3'- -AGGCGUUC-GGUg--CCGUgGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 10433 0.68 0.247001
Target:  5'- aUCCGCGGGgaCCACGaCACCGCCaaCGAg -3'
miRNA:   3'- -AGGCGUUC--GGUGCcGUGGCGGcgGUU- -5'
19561 3' -62.5 NC_004686.1 + 13678 0.67 0.266125
Target:  5'- -gUGCAguugauucAGCCGCGGCGCUGgucCCGCCc- -3'
miRNA:   3'- agGCGU--------UCGGUGCCGUGGC---GGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 32387 0.67 0.266125
Target:  5'- cUCCGCucGCCGCGGCcgAUCGCgGUg-- -3'
miRNA:   3'- -AGGCGuuCGGUGCCG--UGGCGgCGguu -5'
19561 3' -62.5 NC_004686.1 + 12507 0.67 0.272092
Target:  5'- cCCGCAGGgccaccuCCugGGCcgcagGCUGCCaGCCAGc -3'
miRNA:   3'- aGGCGUUC-------GGugCCG-----UGGCGG-CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 48901 0.67 0.272762
Target:  5'- -aCGCGgacGGCgCACGGaaucugGCCGCCGCCc- -3'
miRNA:   3'- agGCGU---UCG-GUGCCg-----UGGCGGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 15585 0.68 0.223288
Target:  5'- aCCGCAGGCCGucCGGUAaugaGCCGCa-- -3'
miRNA:   3'- aGGCGUUCGGU--GCCGUgg--CGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 2616 0.69 0.210548
Target:  5'- cUCCG-AGGCCAcuggugaguggaauCGGCGCCGUCGCgGu -3'
miRNA:   3'- -AGGCgUUCGGU--------------GCCGUGGCGGCGgUu -5'
19561 3' -62.5 NC_004686.1 + 51078 0.69 0.190874
Target:  5'- gUCGCAuAGCgGCGGCAuucucguCCGCCGCgAGg -3'
miRNA:   3'- aGGCGU-UCGgUGCCGU-------GGCGGCGgUU- -5'
19561 3' -62.5 NC_004686.1 + 22128 0.74 0.090152
Target:  5'- -gCGCGcgcGGCCucgGCGGCACCGCUGUCAu -3'
miRNA:   3'- agGCGU---UCGG---UGCCGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 42934 0.73 0.109248
Target:  5'- aCCGCAGGCCccgggcucucgGCGGCucUCGCCGCgAAg -3'
miRNA:   3'- aGGCGUUCGG-----------UGCCGu-GGCGGCGgUU- -5'
19561 3' -62.5 NC_004686.1 + 3983 0.72 0.125145
Target:  5'- aUCCGCAGGCCGCGGaUACaUGCgGCgCAc -3'
miRNA:   3'- -AGGCGUUCGGUGCC-GUG-GCGgCG-GUu -5'
19561 3' -62.5 NC_004686.1 + 14608 0.71 0.147042
Target:  5'- aCCGCAuuugacggacuGGCC-C-GCACCGUCGCCGAg -3'
miRNA:   3'- aGGCGU-----------UCGGuGcCGUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 8008 0.71 0.14862
Target:  5'- aUCGCAAGaUCACgauccgucacgaugaGGCGCCGCUGCCGc -3'
miRNA:   3'- aGGCGUUC-GGUG---------------CCGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 3541 0.71 0.155086
Target:  5'- gCCGCGuucagGGCCGCGGCA-CGCUGCa-- -3'
miRNA:   3'- aGGCGU-----UCGGUGCCGUgGCGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 29937 0.7 0.163527
Target:  5'- -gUGCucGGCCugauCGGCaaGCCGCCGCCAc -3'
miRNA:   3'- agGCGu-UCGGu---GCCG--UGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 12442 0.7 0.171925
Target:  5'- cUCCGCcgauGCCACaucagggcaauggGGCACCGCCGggaCCGGg -3'
miRNA:   3'- -AGGCGuu--CGGUG-------------CCGUGGCGGC---GGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.