miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19561 3' -62.5 NC_004686.1 + 3528 1.05 0.000325
Target:  5'- cUCCGCAAGCCACGGCACCGCCGCCAAc -3'
miRNA:   3'- -AGGCGUUCGGUGCCGUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 22071 0.68 0.234893
Target:  5'- aCCGgAAuacGCCuuGGCACCGCCagcgccGCCGAg -3'
miRNA:   3'- aGGCgUU---CGGugCCGUGGCGG------CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 22203 0.68 0.253246
Target:  5'- gCCGCcgAGGCCGCGcGCGCCaCUGCuCGAc -3'
miRNA:   3'- aGGCG--UUCGGUGC-CGUGGcGGCG-GUU- -5'
19561 3' -62.5 NC_004686.1 + 3823 0.66 0.338499
Target:  5'- gUCGUAccAGUC-CGcCGCCGCCGCCAu -3'
miRNA:   3'- aGGCGU--UCGGuGCcGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 12237 0.72 0.125145
Target:  5'- gCCGCuGGCCccGCGGCcugACCGCCggcGCCGAa -3'
miRNA:   3'- aGGCGuUCGG--UGCCG---UGGCGG---CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 18990 0.71 0.159256
Target:  5'- aCgGCGAGuucaauCCACGGCACCuUCGCCGAa -3'
miRNA:   3'- aGgCGUUC------GGUGCCGUGGcGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 22294 0.7 0.172378
Target:  5'- uUCUGCucuGGCCAUugguugGGCuGCUGCCGCCGu -3'
miRNA:   3'- -AGGCGu--UCGGUG------CCG-UGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 22824 0.7 0.176962
Target:  5'- aCCGCGauAGCCGCGGCGCCGgggGUUAGg -3'
miRNA:   3'- aGGCGU--UCGGUGCCGUGGCgg-CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 37908 0.69 0.190874
Target:  5'- gCCGCAuggGGCgACGGC-CCGCCuaucucagaacaaGCCAGc -3'
miRNA:   3'- aGGCGU---UCGgUGCCGuGGCGG-------------CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 12177 0.68 0.234893
Target:  5'- gCCGCGguAGCCGCaGCAgaaGCCGCCu- -3'
miRNA:   3'- aGGCGU--UCGGUGcCGUgg-CGGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 47892 0.69 0.206797
Target:  5'- aUCCGCccccgcGCCAaaGCGCCcguaGCCGCCAAc -3'
miRNA:   3'- -AGGCGuu----CGGUgcCGUGG----CGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 21925 0.7 0.186457
Target:  5'- gCCGUccgGAGCCGCcgcccGCGCCcgcGCCGCCGAg -3'
miRNA:   3'- aGGCG---UUCGGUGc----CGUGG---CGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 6403 0.77 0.056133
Target:  5'- cCCGCAGGCCACGGUGUCGaCCGCgAAg -3'
miRNA:   3'- aGGCGUUCGGUGCCGUGGC-GGCGgUU- -5'
19561 3' -62.5 NC_004686.1 + 39846 0.69 0.214358
Target:  5'- aCCGUc-GCCGCGGCguccguguaggaggcGCCGUCGUCGAg -3'
miRNA:   3'- aGGCGuuCGGUGCCG---------------UGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 29208 0.77 0.056133
Target:  5'- aUCCGCAAG-CGCGGC-CCGCCgacGCCGAu -3'
miRNA:   3'- -AGGCGUUCgGUGCCGuGGCGG---CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 21972 0.7 0.181655
Target:  5'- aCCGCcaccGCCAC--CGCCGCCGCCGu -3'
miRNA:   3'- aGGCGuu--CGGUGccGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 14688 0.68 0.223288
Target:  5'- -gUGCGGGCCaguccgucaaauGCGGUGCCGCCGUUGGa -3'
miRNA:   3'- agGCGUUCGG------------UGCCGUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 22574 0.68 0.247001
Target:  5'- gCUGCccaccGGUgACGGuCAUCGCCGCCGGg -3'
miRNA:   3'- aGGCGu----UCGgUGCC-GUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 21311 0.73 0.109248
Target:  5'- aUCCGUAcGCCGuggcccaGGCACCGCUGCUGAc -3'
miRNA:   3'- -AGGCGUuCGGUg------CCGUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 25655 0.7 0.1679
Target:  5'- aCCGCAGGCCgGCGG-ACuCGUgGCCGAu -3'
miRNA:   3'- aGGCGUUCGG-UGCCgUG-GCGgCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.