miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19561 3' -62.5 NC_004686.1 + 2616 0.69 0.210548
Target:  5'- cUCCG-AGGCCAcuggugaguggaauCGGCGCCGUCGCgGu -3'
miRNA:   3'- -AGGCgUUCGGU--------------GCCGUGGCGGCGgUu -5'
19561 3' -62.5 NC_004686.1 + 3528 1.05 0.000325
Target:  5'- cUCCGCAAGCCACGGCACCGCCGCCAAc -3'
miRNA:   3'- -AGGCGUUCGGUGCCGUGGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 3541 0.71 0.155086
Target:  5'- gCCGCGuucagGGCCGCGGCA-CGCUGCa-- -3'
miRNA:   3'- aGGCGU-----UCGGUGCCGUgGCGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 3823 0.66 0.338499
Target:  5'- gUCGUAccAGUC-CGcCGCCGCCGCCAu -3'
miRNA:   3'- aGGCGU--UCGGuGCcGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 3983 0.72 0.125145
Target:  5'- aUCCGCAGGCCGCGGaUACaUGCgGCgCAc -3'
miRNA:   3'- -AGGCGUUCGGUGCC-GUG-GCGgCG-GUu -5'
19561 3' -62.5 NC_004686.1 + 5620 0.67 0.286431
Target:  5'- cUCCGgGccGCCACGGacgguguccgaCACCGCCGCg-- -3'
miRNA:   3'- -AGGCgUu-CGGUGCC-----------GUGGCGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 6403 0.77 0.056133
Target:  5'- cCCGCAGGCCACGGUGUCGaCCGCgAAg -3'
miRNA:   3'- aGGCGUUCGGUGCCGUGGC-GGCGgUU- -5'
19561 3' -62.5 NC_004686.1 + 8008 0.71 0.14862
Target:  5'- aUCGCAAGaUCACgauccgucacgaugaGGCGCCGCUGCCGc -3'
miRNA:   3'- aGGCGUUC-GGUG---------------CCGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 9773 0.66 0.322949
Target:  5'- uUCUGCu-GCCAa--CACUGCCGCCAc -3'
miRNA:   3'- -AGGCGuuCGGUgccGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 10133 0.66 0.314626
Target:  5'- aCCGCGcgcuggaAGuCCGCGGCAgaaaccUUGCCGUCAGa -3'
miRNA:   3'- aGGCGU-------UC-GGUGCCGU------GGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 10433 0.68 0.247001
Target:  5'- aUCCGCGGGgaCCACGaCACCGCCaaCGAg -3'
miRNA:   3'- -AGGCGUUC--GGUGCcGUGGCGGcgGUU- -5'
19561 3' -62.5 NC_004686.1 + 12177 0.68 0.234893
Target:  5'- gCCGCGguAGCCGCaGCAgaaGCCGCCu- -3'
miRNA:   3'- aGGCGU--UCGGUGcCGUgg-CGGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 12237 0.72 0.125145
Target:  5'- gCCGCuGGCCccGCGGCcugACCGCCggcGCCGAa -3'
miRNA:   3'- aGGCGuUCGG--UGCCG---UGGCGG---CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 12332 0.66 0.307938
Target:  5'- gCCGCAAGggGCGGCuauGCCGgCgGCCAc -3'
miRNA:   3'- aGGCGUUCggUGCCG---UGGC-GgCGGUu -5'
19561 3' -62.5 NC_004686.1 + 12422 0.66 0.322949
Target:  5'- gUCGUcguGGCCGcCGGCAuaGCCGCCc- -3'
miRNA:   3'- aGGCGu--UCGGU-GCCGUggCGGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 12442 0.7 0.171925
Target:  5'- cUCCGCcgauGCCACaucagggcaauggGGCACCGCCGggaCCGGg -3'
miRNA:   3'- -AGGCGuu--CGGUG-------------CCGUGGCGGC---GGUU- -5'
19561 3' -62.5 NC_004686.1 + 12507 0.67 0.272092
Target:  5'- cCCGCAGGgccaccuCCugGGCcgcagGCUGCCaGCCAGc -3'
miRNA:   3'- aGGCGUUC-------GGugCCG-----UGGCGG-CGGUU- -5'
19561 3' -62.5 NC_004686.1 + 13678 0.67 0.266125
Target:  5'- -gUGCAguugauucAGCCGCGGCGCUGgucCCGCCc- -3'
miRNA:   3'- agGCGU--------UCGGUGCCGUGGC---GGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 14510 0.67 0.27953
Target:  5'- aUCCG-GAGCCGUGGCGCgGC-GCCAAc -3'
miRNA:   3'- -AGGCgUUCGGUGCCGUGgCGgCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 14584 0.67 0.293466
Target:  5'- gCCGC--GCCACGGCuCCGgaUCGCCu- -3'
miRNA:   3'- aGGCGuuCGGUGCCGuGGC--GGCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.