miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19571 5' -50.1 NC_004686.1 + 43810 0.67 0.882783
Target:  5'- cGGC-CCAGGUugcgUGCCGcgACCAa -3'
miRNA:   3'- -CCGaGGUUCGuguaACGGUuaUGGUg -5'
19571 5' -50.1 NC_004686.1 + 49783 0.67 0.897268
Target:  5'- -cCUCCGAGgGCuUUGUCGAUuuccucgGCCACa -3'
miRNA:   3'- ccGAGGUUCgUGuAACGGUUA-------UGGUG- -5'
19571 5' -50.1 NC_004686.1 + 51185 0.68 0.827729
Target:  5'- aGGCugUCCAGGUACA--GCCucgcggcggacgagAAUGCCGCc -3'
miRNA:   3'- -CCG--AGGUUCGUGUaaCGG--------------UUAUGGUG- -5'
19571 5' -50.1 NC_004686.1 + 52700 0.7 0.759438
Target:  5'- cGCUCCAccAGCcaggaguaGUUGCCG-UGCCGCu -3'
miRNA:   3'- cCGAGGU--UCGug------UAACGGUuAUGGUG- -5'
19571 5' -50.1 NC_004686.1 + 54808 0.67 0.874746
Target:  5'- cGGCgcauUCCcggaAGGCGCGUUGCUcGUGauCCACa -3'
miRNA:   3'- -CCG----AGG----UUCGUGUAACGGuUAU--GGUG- -5'
19571 5' -50.1 NC_004686.1 + 55943 0.68 0.849005
Target:  5'- cGCgCCAucAGCACAUgGaCCGAUACCGu -3'
miRNA:   3'- cCGaGGU--UCGUGUAaC-GGUUAUGGUg -5'
19571 5' -50.1 NC_004686.1 + 56147 0.66 0.91204
Target:  5'- cGGgUCCAccGGuCGCGggUGCCGA-ACCGCc -3'
miRNA:   3'- -CCgAGGU--UC-GUGUa-ACGGUUaUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.