Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19571 | 5' | -50.1 | NC_004686.1 | + | 43810 | 0.67 | 0.882783 |
Target: 5'- cGGC-CCAGGUugcgUGCCGcgACCAa -3' miRNA: 3'- -CCGaGGUUCGuguaACGGUuaUGGUg -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 49783 | 0.67 | 0.897268 |
Target: 5'- -cCUCCGAGgGCuUUGUCGAUuuccucgGCCACa -3' miRNA: 3'- ccGAGGUUCgUGuAACGGUUA-------UGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 51185 | 0.68 | 0.827729 |
Target: 5'- aGGCugUCCAGGUACA--GCCucgcggcggacgagAAUGCCGCc -3' miRNA: 3'- -CCG--AGGUUCGUGUaaCGG--------------UUAUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 52700 | 0.7 | 0.759438 |
Target: 5'- cGCUCCAccAGCcaggaguaGUUGCCG-UGCCGCu -3' miRNA: 3'- cCGAGGU--UCGug------UAACGGUuAUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 54808 | 0.67 | 0.874746 |
Target: 5'- cGGCgcauUCCcggaAGGCGCGUUGCUcGUGauCCACa -3' miRNA: 3'- -CCG----AGG----UUCGUGUAACGGuUAU--GGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 55943 | 0.68 | 0.849005 |
Target: 5'- cGCgCCAucAGCACAUgGaCCGAUACCGu -3' miRNA: 3'- cCGaGGU--UCGUGUAaC-GGUUAUGGUg -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 56147 | 0.66 | 0.91204 |
Target: 5'- cGGgUCCAccGGuCGCGggUGCCGA-ACCGCc -3' miRNA: 3'- -CCgAGGU--UC-GUGUa-ACGGUUaUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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