miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19571 5' -50.1 NC_004686.1 + 24429 0.73 0.600541
Target:  5'- gGGCUCCAcacGGCGCcUUGUCc--GCCGCu -3'
miRNA:   3'- -CCGAGGU---UCGUGuAACGGuuaUGGUG- -5'
19571 5' -50.1 NC_004686.1 + 25894 0.71 0.715345
Target:  5'- cGGCcgcgggCC-GGCGCAcaGCCAGUACCAg -3'
miRNA:   3'- -CCGa-----GGuUCGUGUaaCGGUUAUGGUg -5'
19571 5' -50.1 NC_004686.1 + 39761 0.7 0.726537
Target:  5'- gGGCUUCGccgcGGCugA-UGCCG-UGCCGCa -3'
miRNA:   3'- -CCGAGGU----UCGugUaACGGUuAUGGUG- -5'
19571 5' -50.1 NC_004686.1 + 21299 0.7 0.748597
Target:  5'- uGGC-CCAGGCACcgcugcUGaCCGAcACCACa -3'
miRNA:   3'- -CCGaGGUUCGUGua----AC-GGUUaUGGUG- -5'
19571 5' -50.1 NC_004686.1 + 26422 0.7 0.748597
Target:  5'- gGGUgggCCAGGCGCAU--UCGAUGCCGa -3'
miRNA:   3'- -CCGa--GGUUCGUGUAacGGUUAUGGUg -5'
19571 5' -50.1 NC_004686.1 + 13036 0.7 0.748597
Target:  5'- cGGCgcugCCGAGCACccUGCUu---CCACg -3'
miRNA:   3'- -CCGa---GGUUCGUGuaACGGuuauGGUG- -5'
19571 5' -50.1 NC_004686.1 + 22490 0.66 0.93426
Target:  5'- aGGCUgguacagCCAgucgaugcgguuguAGC-CAUcggUGCCGGUGCCGCc -3'
miRNA:   3'- -CCGA-------GGU--------------UCGuGUA---ACGGUUAUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.