Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19575 | 3' | -62.2 | NC_004686.1 | + | 24244 | 0.66 | 0.41433 |
Target: 5'- uGUUGggggugGGCCGCCuGGCGggguugguuucucaGGCCuucGCCCc -3' miRNA: 3'- gCAGCa-----CCGGCGG-CCGUa-------------UCGG---CGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 18358 | 0.66 | 0.408136 |
Target: 5'- gCGUuugCGUGGCUGCUGGCGgggaucuccaccaaUaAGCCGgUCg -3' miRNA: 3'- -GCA---GCACCGGCGGCCGU--------------A-UCGGCgGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 49037 | 0.66 | 0.402001 |
Target: 5'- gGcCGUGGCUGUucauucccggCGGCAgcgAGgaCGCCCu -3' miRNA: 3'- gCaGCACCGGCG----------GCCGUa--UCg-GCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 29116 | 0.66 | 0.402001 |
Target: 5'- gCGUCGggaucGG-CGUCGGCG-GGCCGCgCu -3' miRNA: 3'- -GCAGCa----CCgGCGGCCGUaUCGGCGgG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 37918 | 0.66 | 0.402001 |
Target: 5'- cCGUCGUcccGCCGCauggGGCGacGGCCcGCCUa -3' miRNA: 3'- -GCAGCAc--CGGCGg---CCGUa-UCGG-CGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 12578 | 0.66 | 0.3848 |
Target: 5'- gGagGUGGCCcugcgggaaguGCgGGgGUAGgCGCCCc -3' miRNA: 3'- gCagCACCGG-----------CGgCCgUAUCgGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 54311 | 0.66 | 0.376384 |
Target: 5'- gCGUUGgGGCUGUguuccgCGGCGUacuGGCUGCCa -3' miRNA: 3'- -GCAGCaCCGGCG------GCCGUA---UCGGCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 21932 | 0.66 | 0.376384 |
Target: 5'- -uUCGaGcGCCGuCCGGagccGCCGCCCg -3' miRNA: 3'- gcAGCaC-CGGC-GGCCguauCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 12609 | 0.66 | 0.368092 |
Target: 5'- gGUCaccGGCUgGCUGGCAgccuGCgGCCCa -3' miRNA: 3'- gCAGca-CCGG-CGGCCGUau--CGgCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 39834 | 0.67 | 0.359928 |
Target: 5'- gCGUcCGUGuaggaggcgccGUCGUCGaGCAggcgGGCCGCCUg -3' miRNA: 3'- -GCA-GCAC-----------CGGCGGC-CGUa---UCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 16990 | 0.67 | 0.359928 |
Target: 5'- aCGggCcUGGCCGCCGGCG-GGUCGgCg -3' miRNA: 3'- -GCa-GcACCGGCGGCCGUaUCGGCgGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 16641 | 0.67 | 0.35189 |
Target: 5'- gGUgaUGcGCCGCCGGUGguggugAGUCGUCCa -3' miRNA: 3'- gCAgcAC-CGGCGGCCGUa-----UCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 31212 | 0.67 | 0.35189 |
Target: 5'- cCGUCGUcGCUGCgGGCGcgcaGGuuGCCg -3' miRNA: 3'- -GCAGCAcCGGCGgCCGUa---UCggCGGg -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 45512 | 0.67 | 0.33389 |
Target: 5'- aGUCGuUGGuuGuuGGgGUaugccagaaugaacAGCCGCUCa -3' miRNA: 3'- gCAGC-ACCggCggCCgUA--------------UCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 5364 | 0.67 | 0.321026 |
Target: 5'- uGUCGaGGaucuuCGCCGGCGaacccgacagAGCCGCaCCg -3' miRNA: 3'- gCAGCaCCg----GCGGCCGUa---------UCGGCG-GG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 38956 | 0.67 | 0.321026 |
Target: 5'- aG-CGUGGCgaGCUGGCAccggugaAGCCGgCCa -3' miRNA: 3'- gCaGCACCGg-CGGCCGUa------UCGGCgGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 22107 | 0.68 | 0.30637 |
Target: 5'- uGUCGacgcGCCGCCGuCGgcGCCGUCCu -3' miRNA: 3'- gCAGCac--CGGCGGCcGUauCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 10743 | 0.68 | 0.303501 |
Target: 5'- uCGagGUuGuuGCCGGCAcccccgcggcgcaAGCCGCCCu -3' miRNA: 3'- -GCagCAcCggCGGCCGUa------------UCGGCGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 11414 | 0.68 | 0.27003 |
Target: 5'- aGUgGUGGCCGcCCGGUAUgcgggacauuuggaAGCa-CCCa -3' miRNA: 3'- gCAgCACCGGC-GGCCGUA--------------UCGgcGGG- -5' |
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19575 | 3' | -62.2 | NC_004686.1 | + | 16866 | 0.69 | 0.263575 |
Target: 5'- uGUUGcguUGGCgGCCGGCAacacuauugagggcUGGuaugaCCGCCCa -3' miRNA: 3'- gCAGC---ACCGgCGGCCGU--------------AUC-----GGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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