miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19576 3' -55 NC_004686.1 + 31024 0.65 0.781538
Target:  5'- cGGACAGAac--CACCagcaGCCuuGGCCGCg -3'
miRNA:   3'- -CCUGUCUaucuGUGGga--CGG--CUGGCG- -5'
19576 3' -55 NC_004686.1 + 4713 0.66 0.775595
Target:  5'- aGGaACAGAUcagcgucuuccagugAGAUuCCgUGCgUGACCGCa -3'
miRNA:   3'- -CC-UGUCUA---------------UCUGuGGgACG-GCUGGCG- -5'
19576 3' -55 NC_004686.1 + 5265 0.66 0.775595
Target:  5'- cGGACAGGUccgccauggucugcaGGACGCCgaGuuGACg-- -3'
miRNA:   3'- -CCUGUCUA---------------UCUGUGGgaCggCUGgcg -5'
19576 3' -55 NC_004686.1 + 12844 0.66 0.769599
Target:  5'- cGGGCAGAacgaUGaACACCuCUGCgugcacggcgagGACCGCg -3'
miRNA:   3'- -CCUGUCU----AUcUGUGG-GACGg-----------CUGGCG- -5'
19576 3' -55 NC_004686.1 + 7182 0.66 0.760512
Target:  5'- uGGCcgccguGCACCCUGCCGgcucgacACCGCa -3'
miRNA:   3'- cCUGucuaucUGUGGGACGGC-------UGGCG- -5'
19576 3' -55 NC_004686.1 + 17443 0.67 0.72003
Target:  5'- aGGAUGGGaaugucuGACGCCCaGuuGGCCaGCg -3'
miRNA:   3'- -CCUGUCUau-----CUGUGGGaCggCUGG-CG- -5'
19576 3' -55 NC_004686.1 + 13277 0.67 0.72003
Target:  5'- cGGACuGGUaugAGAagcCGCaCgUGUCGACCGCc -3'
miRNA:   3'- -CCUGuCUA---UCU---GUG-GgACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 13061 0.67 0.72003
Target:  5'- cGGAgCAGAacGAguCCCUGCUGAUCcagGCg -3'
miRNA:   3'- -CCU-GUCUauCUguGGGACGGCUGG---CG- -5'
19576 3' -55 NC_004686.1 + 22356 0.67 0.72003
Target:  5'- uGAUGGuguuguguUGGACAgCUUGCCGccGCCGCc -3'
miRNA:   3'- cCUGUCu-------AUCUGUgGGACGGC--UGGCG- -5'
19576 3' -55 NC_004686.1 + 40586 0.67 0.708348
Target:  5'- gGGACAGGUuccgugcccguugGGACACCggUUGCgacGCCGCc -3'
miRNA:   3'- -CCUGUCUA-------------UCUGUGG--GACGgc-UGGCG- -5'
19576 3' -55 NC_004686.1 + 11730 0.67 0.698723
Target:  5'- cGGucACAuGGcGGGCACCCUGCCcaACgGCa -3'
miRNA:   3'- -CC--UGU-CUaUCUGUGGGACGGc-UGgCG- -5'
19576 3' -55 NC_004686.1 + 11290 0.67 0.698723
Target:  5'- -cACGGAacGcCGCCCUGCUuGAUCGCa -3'
miRNA:   3'- ccUGUCUauCuGUGGGACGG-CUGGCG- -5'
19576 3' -55 NC_004686.1 + 12139 0.67 0.698723
Target:  5'- cGGGCAGuuucGGCGCCggcgGUCaGGCCGCg -3'
miRNA:   3'- -CCUGUCuau-CUGUGGga--CGG-CUGGCG- -5'
19576 3' -55 NC_004686.1 + 45032 0.67 0.69765
Target:  5'- aGGACAGGUcGAaaucaACCCcuacUGCCGACagauccuCGCc -3'
miRNA:   3'- -CCUGUCUAuCUg----UGGG----ACGGCUG-------GCG- -5'
19576 3' -55 NC_004686.1 + 36837 0.67 0.687969
Target:  5'- gGGGCGGGUcGuCACCacgaccgUGCCGAUCGg -3'
miRNA:   3'- -CCUGUCUAuCuGUGGg------ACGGCUGGCg -5'
19576 3' -55 NC_004686.1 + 51358 0.67 0.677161
Target:  5'- -uGCAGGUGGGCAgCCaguucuacGCCGAgUGCg -3'
miRNA:   3'- ccUGUCUAUCUGUgGGa-------CGGCUgGCG- -5'
19576 3' -55 NC_004686.1 + 39184 0.67 0.677161
Target:  5'- gGGcGCAGAggugGGGCGCa-UGaCCGGCCGUg -3'
miRNA:   3'- -CC-UGUCUa---UCUGUGggAC-GGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 43461 0.67 0.677161
Target:  5'- --------cGAUugCCUGCCGAUCGCc -3'
miRNA:   3'- ccugucuauCUGugGGACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 47067 0.68 0.666312
Target:  5'- gGGACAGccGGACGCCCUuauCCGGgaaGCg -3'
miRNA:   3'- -CCUGUCuaUCUGUGGGAc--GGCUgg-CG- -5'
19576 3' -55 NC_004686.1 + 21299 0.68 0.666312
Target:  5'- uGGCcc--AGGCACCgCUGCUGACCGa -3'
miRNA:   3'- cCUGucuaUCUGUGG-GACGGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.