Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19578 | 5' | -56 | NC_004686.1 | + | 13761 | 1.12 | 0.00047 |
Target: 5'- gACCAGCGCCGCGGCUGAAUCAACUGCa -3' miRNA: 3'- -UGGUCGCGGCGCCGACUUAGUUGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 32416 | 0.77 | 0.150377 |
Target: 5'- aACCGGgcguugaaggaCGCCGUGGCUGAGgggCuGCUGCg -3' miRNA: 3'- -UGGUC-----------GCGGCGCCGACUUa--GuUGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 43585 | 0.77 | 0.158456 |
Target: 5'- cACCAGCGCCGCaaugaugGGC-GGAUCAACgggucuagGCg -3' miRNA: 3'- -UGGUCGCGGCG-------CCGaCUUAGUUGa-------CG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 36318 | 0.73 | 0.270373 |
Target: 5'- aGCUGGuCGCCGaGGUUGAG-CGGCUGCg -3' miRNA: 3'- -UGGUC-GCGGCgCCGACUUaGUUGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 49969 | 0.73 | 0.277341 |
Target: 5'- gACCGGCGCCGUacGGg-GAGUCA-CUGUg -3' miRNA: 3'- -UGGUCGCGGCG--CCgaCUUAGUuGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 22747 | 0.73 | 0.277341 |
Target: 5'- cCCGGCGCCGCGGCUaucgcGGUCAcCgGUg -3' miRNA: 3'- uGGUCGCGGCGCCGAc----UUAGUuGaCG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 52821 | 0.71 | 0.354938 |
Target: 5'- uCCGGaGUCGUGGC-GAAUCAAuCUGCa -3' miRNA: 3'- uGGUCgCGGCGCCGaCUUAGUU-GACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 25824 | 0.71 | 0.363491 |
Target: 5'- cGCCGGC-CCGCGGCcggGAcagAUCAACgGUu -3' miRNA: 3'- -UGGUCGcGGCGCCGa--CU---UAGUUGaCG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 17900 | 0.71 | 0.372184 |
Target: 5'- cACCAcauCGCCGCGauGCgGAAUCAcCUGCa -3' miRNA: 3'- -UGGUc--GCGGCGC--CGaCUUAGUuGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 49757 | 0.71 | 0.372184 |
Target: 5'- gGCCAcaugcgcugcGUGCuCGCGGCUGAGUCGgucuuccucGCcGCa -3' miRNA: 3'- -UGGU----------CGCG-GCGCCGACUUAGU---------UGaCG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 52279 | 0.71 | 0.389992 |
Target: 5'- aGCCAGCGuuGCagaucGGCccccUCGGCUGCg -3' miRNA: 3'- -UGGUCGCggCG-----CCGacuuAGUUGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 4122 | 0.7 | 0.408348 |
Target: 5'- uACaCAGCGCCGCGGgaGg--CGACcaugaUGCa -3' miRNA: 3'- -UG-GUCGCGGCGCCgaCuuaGUUG-----ACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 36154 | 0.7 | 0.417726 |
Target: 5'- uGCCuacGgGCCGUGGgaGu-UCGACUGCu -3' miRNA: 3'- -UGGu--CgCGGCGCCgaCuuAGUUGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 32796 | 0.7 | 0.417726 |
Target: 5'- uCCAGCGCuCGaaCGGCaucUGggUCGGCaGCa -3' miRNA: 3'- uGGUCGCG-GC--GCCG---ACuuAGUUGaCG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 12363 | 0.7 | 0.427234 |
Target: 5'- aGCCAGCGCgGa-GCaccaaacgGAGUCAACUGUu -3' miRNA: 3'- -UGGUCGCGgCgcCGa-------CUUAGUUGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 55036 | 0.7 | 0.427234 |
Target: 5'- -gCGGCGCUGCGGUUGAAcugggcgucUCcGgUGCg -3' miRNA: 3'- ugGUCGCGGCGCCGACUU---------AGuUgACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 6238 | 0.7 | 0.43687 |
Target: 5'- cGCCAGCGCgGCGGgU---UCAAcCUGUg -3' miRNA: 3'- -UGGUCGCGgCGCCgAcuuAGUU-GACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 17521 | 0.69 | 0.456508 |
Target: 5'- gAUCGG-GCCGCGGUcguugcUGGcgCAGCUGUu -3' miRNA: 3'- -UGGUCgCGGCGCCG------ACUuaGUUGACG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 21248 | 0.69 | 0.476611 |
Target: 5'- uGCCAGCccCCGCGGCgcgGAA-CAAC-GCc -3' miRNA: 3'- -UGGUCGc-GGCGCCGa--CUUaGUUGaCG- -5' |
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19578 | 5' | -56 | NC_004686.1 | + | 22452 | 0.69 | 0.497143 |
Target: 5'- uGCCGGUGCCGCcaUUGGagccGUCAccGCUGCc -3' miRNA: 3'- -UGGUCGCGGCGccGACU----UAGU--UGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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