miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19578 5' -56 NC_004686.1 + 3292 0.68 0.539325
Target:  5'- cGCCGGCGCUGCGGaaGGcguUCAuucgUGCu -3'
miRNA:   3'- -UGGUCGCGGCGCCgaCUu--AGUug--ACG- -5'
19578 5' -56 NC_004686.1 + 3547 0.66 0.637671
Target:  5'- uUCAGgGCCGCGGCac-----GCUGCa -3'
miRNA:   3'- uGGUCgCGGCGCCGacuuaguUGACG- -5'
19578 5' -56 NC_004686.1 + 4122 0.7 0.408348
Target:  5'- uACaCAGCGCCGCGGgaGg--CGACcaugaUGCa -3'
miRNA:   3'- -UG-GUCGCGGCGCCgaCuuaGUUG-----ACG- -5'
19578 5' -56 NC_004686.1 + 5416 0.68 0.518063
Target:  5'- aGCCAGgucgGgCGUGGCUGAggugccggugGUCAGCUGa -3'
miRNA:   3'- -UGGUCg---CgGCGCCGACU----------UAGUUGACg -5'
19578 5' -56 NC_004686.1 + 6238 0.7 0.43687
Target:  5'- cGCCAGCGCgGCGGgU---UCAAcCUGUg -3'
miRNA:   3'- -UGGUCGCGgCGCCgAcuuAGUU-GACG- -5'
19578 5' -56 NC_004686.1 + 7773 0.68 0.560875
Target:  5'- gACCGGC-CUGCGGCccacacauucuuUGAAUCGGCcaugaugGCu -3'
miRNA:   3'- -UGGUCGcGGCGCCG------------ACUUAGUUGa------CG- -5'
19578 5' -56 NC_004686.1 + 10065 0.68 0.532914
Target:  5'- uCCAGCG-CGCGGUgcaugacaacaucgcUGggUCGGC-GCa -3'
miRNA:   3'- uGGUCGCgGCGCCG---------------ACuuAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 12108 0.68 0.518063
Target:  5'- -gCGGCuaCCGCGGCU---UCGGCUGCc -3'
miRNA:   3'- ugGUCGc-GGCGCCGAcuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 12363 0.7 0.427234
Target:  5'- aGCCAGCGCgGa-GCaccaaacgGAGUCAACUGUu -3'
miRNA:   3'- -UGGUCGCGgCgcCGa-------CUUAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 13761 1.12 0.00047
Target:  5'- gACCAGCGCCGCGGCUGAAUCAACUGCa -3'
miRNA:   3'- -UGGUCGCGGCGCCGACUUAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 14585 0.66 0.626639
Target:  5'- cGCC-GCGCCaCGGCUccGGAUCGcCUGg -3'
miRNA:   3'- -UGGuCGCGGcGCCGA--CUUAGUuGACg -5'
19578 5' -56 NC_004686.1 + 17521 0.69 0.456508
Target:  5'- gAUCGG-GCCGCGGUcguugcUGGcgCAGCUGUu -3'
miRNA:   3'- -UGGUCgCGGCGCCG------ACUuaGUUGACG- -5'
19578 5' -56 NC_004686.1 + 17600 0.68 0.518063
Target:  5'- cGCCAGCaacgaCCGCGGCccGAUCAACa-- -3'
miRNA:   3'- -UGGUCGc----GGCGCCGacUUAGUUGacg -5'
19578 5' -56 NC_004686.1 + 17900 0.71 0.372184
Target:  5'- cACCAcauCGCCGCGauGCgGAAUCAcCUGCa -3'
miRNA:   3'- -UGGUc--GCGGCGC--CGaCUUAGUuGACG- -5'
19578 5' -56 NC_004686.1 + 21172 0.66 0.670695
Target:  5'- uCC-GCGCCGCGGgggcuggcaCUGGuUCAGC-GCa -3'
miRNA:   3'- uGGuCGCGGCGCC---------GACUuAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 21248 0.69 0.476611
Target:  5'- uGCCAGCccCCGCGGCgcgGAA-CAAC-GCc -3'
miRNA:   3'- -UGGUCGc-GGCGCCGa--CUUaGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 22026 0.66 0.65971
Target:  5'- -aCGGCGCCGaCGGCggcGcGUCGACa-- -3'
miRNA:   3'- ugGUCGCGGC-GCCGa--CuUAGUUGacg -5'
19578 5' -56 NC_004686.1 + 22051 0.67 0.593611
Target:  5'- cGCCAGCGCCGCc---GAGUCcGC-GCg -3'
miRNA:   3'- -UGGUCGCGGCGccgaCUUAGuUGaCG- -5'
19578 5' -56 NC_004686.1 + 22315 0.66 0.626639
Target:  5'- cGCCAGCGcCCGCGccGUUGGuu---CUGCu -3'
miRNA:   3'- -UGGUCGC-GGCGC--CGACUuaguuGACG- -5'
19578 5' -56 NC_004686.1 + 22452 0.69 0.497143
Target:  5'- uGCCGGUGCCGCcaUUGGagccGUCAccGCUGCc -3'
miRNA:   3'- -UGGUCGCGGCGccGACU----UAGU--UGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.