miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19578 5' -56 NC_004686.1 + 43585 0.77 0.158456
Target:  5'- cACCAGCGCCGCaaugaugGGC-GGAUCAACgggucuagGCg -3'
miRNA:   3'- -UGGUCGCGGCG-------CCGaCUUAGUUGa-------CG- -5'
19578 5' -56 NC_004686.1 + 10065 0.68 0.532914
Target:  5'- uCCAGCG-CGCGGUgcaugacaacaucgcUGggUCGGC-GCa -3'
miRNA:   3'- uGGUCGCgGCGCCG---------------ACuuAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 3292 0.68 0.539325
Target:  5'- cGCCGGCGCUGCGGaaGGcguUCAuucgUGCu -3'
miRNA:   3'- -UGGUCGCGGCGCCgaCUu--AGUug--ACG- -5'
19578 5' -56 NC_004686.1 + 39769 0.67 0.6046
Target:  5'- uACaCGGaCGCCGCGGCgacGGUgGGgUGCa -3'
miRNA:   3'- -UG-GUC-GCGGCGCCGac-UUAgUUgACG- -5'
19578 5' -56 NC_004686.1 + 35286 0.66 0.625536
Target:  5'- uCCGGCGUCGgcguggaaugagcUGGCUGAG---GCUGCc -3'
miRNA:   3'- uGGUCGCGGC-------------GCCGACUUaguUGACG- -5'
19578 5' -56 NC_004686.1 + 3547 0.66 0.637671
Target:  5'- uUCAGgGCCGCGGCac-----GCUGCa -3'
miRNA:   3'- uGGUCgCGGCGCCGacuuaguUGACG- -5'
19578 5' -56 NC_004686.1 + 22026 0.66 0.65971
Target:  5'- -aCGGCGCCGaCGGCggcGcGUCGACa-- -3'
miRNA:   3'- ugGUCGCGGC-GCCGa--CuUAGUUGacg -5'
19578 5' -56 NC_004686.1 + 21172 0.66 0.670695
Target:  5'- uCC-GCGCCGCGGgggcuggcaCUGGuUCAGC-GCa -3'
miRNA:   3'- uGGuCGCGGCGCC---------GACUuAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 49878 0.66 0.680552
Target:  5'- cGCCGGCgacgaagGCCGCGGCgaacGAUCAucgagaucACcGCg -3'
miRNA:   3'- -UGGUCG-------CGGCGCCGac--UUAGU--------UGaCG- -5'
19578 5' -56 NC_004686.1 + 12108 0.68 0.518063
Target:  5'- -gCGGCuaCCGCGGCU---UCGGCUGCc -3'
miRNA:   3'- ugGUCGc-GGCGCCGAcuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 17521 0.69 0.456508
Target:  5'- gAUCGG-GCCGCGGUcguugcUGGcgCAGCUGUu -3'
miRNA:   3'- -UGGUCgCGGCGCCG------ACUuaGUUGACG- -5'
19578 5' -56 NC_004686.1 + 36318 0.73 0.270373
Target:  5'- aGCUGGuCGCCGaGGUUGAG-CGGCUGCg -3'
miRNA:   3'- -UGGUC-GCGGCgCCGACUUaGUUGACG- -5'
19578 5' -56 NC_004686.1 + 22747 0.73 0.277341
Target:  5'- cCCGGCGCCGCGGCUaucgcGGUCAcCgGUg -3'
miRNA:   3'- uGGUCGCGGCGCCGAc----UUAGUuGaCG- -5'
19578 5' -56 NC_004686.1 + 49969 0.73 0.277341
Target:  5'- gACCGGCGCCGUacGGg-GAGUCA-CUGUg -3'
miRNA:   3'- -UGGUCGCGGCG--CCgaCUUAGUuGACG- -5'
19578 5' -56 NC_004686.1 + 52821 0.71 0.354938
Target:  5'- uCCGGaGUCGUGGC-GAAUCAAuCUGCa -3'
miRNA:   3'- uGGUCgCGGCGCCGaCUUAGUU-GACG- -5'
19578 5' -56 NC_004686.1 + 25824 0.71 0.363491
Target:  5'- cGCCGGC-CCGCGGCcggGAcagAUCAACgGUu -3'
miRNA:   3'- -UGGUCGcGGCGCCGa--CU---UAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 52279 0.71 0.389992
Target:  5'- aGCCAGCGuuGCagaucGGCccccUCGGCUGCg -3'
miRNA:   3'- -UGGUCGCggCG-----CCGacuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 36154 0.7 0.417726
Target:  5'- uGCCuacGgGCCGUGGgaGu-UCGACUGCu -3'
miRNA:   3'- -UGGu--CgCGGCGCCgaCuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 6238 0.7 0.43687
Target:  5'- cGCCAGCGCgGCGGgU---UCAAcCUGUg -3'
miRNA:   3'- -UGGUCGCGgCGCCgAcuuAGUU-GACG- -5'
19578 5' -56 NC_004686.1 + 25649 0.66 0.681645
Target:  5'- gGCCGGCGgacUCGUGGCcGAucUGGCUGUa -3'
miRNA:   3'- -UGGUCGC---GGCGCCGaCUuaGUUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.