miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19583 3' -49.3 NC_004686.1 + 21639 0.66 0.974769
Target:  5'- cCCAcGAAAGCaa-GUCUGUucauugauGGUGGGCg -3'
miRNA:   3'- -GGUuUUUUUGgggCAGGCA--------CUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 43090 0.66 0.974769
Target:  5'- uCCAGAu---UCCCGUCCucuacagGGGCa -3'
miRNA:   3'- -GGUUUuuuuGGGGCAGGcacua--CCCG- -5'
19583 3' -49.3 NC_004686.1 + 33379 0.66 0.974769
Target:  5'- --------cCCCCGa-CGUGAUGGGUc -3'
miRNA:   3'- gguuuuuuuGGGGCagGCACUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 27466 0.66 0.971794
Target:  5'- gCCAAG--GACgCUaUCUGUGcGUGGGCa -3'
miRNA:   3'- -GGUUUuuUUGgGGcAGGCAC-UACCCG- -5'
19583 3' -49.3 NC_004686.1 + 42908 0.66 0.971794
Target:  5'- cCgGGGGAAACCCCGUgaaCCGgcgacucAUGaGGCg -3'
miRNA:   3'- -GgUUUUUUUGGGGCA---GGCac-----UAC-CCG- -5'
19583 3' -49.3 NC_004686.1 + 52411 0.66 0.968575
Target:  5'- gCUGGAAGuACUCCgGUCCccaaGUGGUGuGGCa -3'
miRNA:   3'- -GGUUUUUuUGGGG-CAGG----CACUAC-CCG- -5'
19583 3' -49.3 NC_004686.1 + 11926 0.66 0.967901
Target:  5'- gCCGGugggcaaCCCGUCCagggcaGUGAUGGuGCc -3'
miRNA:   3'- -GGUUuuuuug-GGGCAGG------CACUACC-CG- -5'
19583 3' -49.3 NC_004686.1 + 22471 0.66 0.965461
Target:  5'- aCCAucaucAGCCCCGccccggcggcgaugaCCGUcaccGGUGGGCa -3'
miRNA:   3'- -GGUuuuu-UUGGGGCa--------------GGCA----CUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 23926 0.66 0.965102
Target:  5'- gCGAAGGugUCCCGUCCGaaucGAUcgucaGGGUa -3'
miRNA:   3'- gGUUUUUuuGGGGCAGGCa---CUA-----CCCG- -5'
19583 3' -49.3 NC_004686.1 + 8276 0.66 0.961369
Target:  5'- aCAGuccuGCCCgGugguuuUCCGUGGcUGGGCc -3'
miRNA:   3'- gGUUuuuuUGGGgC------AGGCACU-ACCCG- -5'
19583 3' -49.3 NC_004686.1 + 16290 0.66 0.961369
Target:  5'- gCUAGAcauGACUCCGUUgGUGG-GGGUu -3'
miRNA:   3'- -GGUUUuu-UUGGGGCAGgCACUaCCCG- -5'
19583 3' -49.3 NC_004686.1 + 5945 0.66 0.961369
Target:  5'- aCCAGAAc-GgUCUGUCCGUuggGGGCg -3'
miRNA:   3'- -GGUUUUuuUgGGGCAGGCAcuaCCCG- -5'
19583 3' -49.3 NC_004686.1 + 38855 0.66 0.960981
Target:  5'- gCUggGAAuGCCCCGUgcagCCGcagugccUGcaGUGGGCg -3'
miRNA:   3'- -GGuuUUUuUGGGGCA----GGC-------AC--UACCCG- -5'
19583 3' -49.3 NC_004686.1 + 39815 0.67 0.957368
Target:  5'- gCCGcAAGuuCCCCGgUCGUGGcUGGGa -3'
miRNA:   3'- -GGUuUUUuuGGGGCaGGCACU-ACCCg -5'
19583 3' -49.3 NC_004686.1 + 50913 0.67 0.953093
Target:  5'- uCCAcGAGAGCCCUGUuuGUcc--GGCg -3'
miRNA:   3'- -GGUuUUUUUGGGGCAggCAcuacCCG- -5'
19583 3' -49.3 NC_004686.1 + 48230 0.67 0.953093
Target:  5'- uCCGGGGAAGCCgCUGcCCGgucgGGUcauccacuucGGGCg -3'
miRNA:   3'- -GGUUUUUUUGG-GGCaGGCa---CUA----------CCCG- -5'
19583 3' -49.3 NC_004686.1 + 5111 0.67 0.943699
Target:  5'- aCCGAc--GACCUCG-CCGcGAggcgGGGCg -3'
miRNA:   3'- -GGUUuuuUUGGGGCaGGCaCUa---CCCG- -5'
19583 3' -49.3 NC_004686.1 + 35718 0.67 0.938044
Target:  5'- uCCGAAuuGGCCUacuuguaCGUCgGUGAUGGa- -3'
miRNA:   3'- -GGUUUuuUUGGG-------GCAGgCACUACCcg -5'
19583 3' -49.3 NC_004686.1 + 19547 0.68 0.933156
Target:  5'- gCCGccGAcGCCgCCGgaaacggUUGUGGUGGGCa -3'
miRNA:   3'- -GGUuuUUuUGG-GGCa------GGCACUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 44732 0.68 0.927448
Target:  5'- uCCGAuguGAGGAUgaUCUGUCCGUu-UGGGCg -3'
miRNA:   3'- -GGUU---UUUUUG--GGGCAGGCAcuACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.