miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19583 5' -54.6 NC_004686.1 + 25944 0.66 0.804055
Target:  5'- cGGGAcaCCGcGACGAUGu--CACCGAcgUCg -3'
miRNA:   3'- -CCCU--GGCaCUGCUGCuucGUGGCU--AG- -5'
19583 5' -54.6 NC_004686.1 + 3755 0.66 0.804055
Target:  5'- cGGACUG-GuACGACGAgcugcgugaaAGCGCUGAg- -3'
miRNA:   3'- cCCUGGCaC-UGCUGCU----------UCGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 5540 0.66 0.794506
Target:  5'- cGGAcaccguCCGUGGCGGCccgGAGGCugUGAc- -3'
miRNA:   3'- cCCU------GGCACUGCUG---CUUCGugGCUag -5'
19583 5' -54.6 NC_004686.1 + 38606 0.66 0.794506
Target:  5'- -uGGCgGUGACGAUGgcGUcUCGGUCg -3'
miRNA:   3'- ccCUGgCACUGCUGCuuCGuGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 49176 0.66 0.794506
Target:  5'- -cGACCGUGAUGGCGuuuGGC-UCGcgCu -3'
miRNA:   3'- ccCUGGCACUGCUGCu--UCGuGGCuaG- -5'
19583 5' -54.6 NC_004686.1 + 23665 0.66 0.794506
Target:  5'- cGGuGACaccagcccaGgugGugGACGAuGCACCGAUg -3'
miRNA:   3'- -CC-CUGg--------Ca--CugCUGCUuCGUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 28525 0.66 0.794506
Target:  5'- aGGGCaGUaGugG-UGAAGCACCGGUg -3'
miRNA:   3'- cCCUGgCA-CugCuGCUUCGUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 27634 0.66 0.794506
Target:  5'- cGGGAUCa-GACGGCGAucGC-CCgGAUCa -3'
miRNA:   3'- -CCCUGGcaCUGCUGCUu-CGuGG-CUAG- -5'
19583 5' -54.6 NC_004686.1 + 54307 0.66 0.78479
Target:  5'- uGGGGCUGUGuuccGCGGCGuacuGGCugccACUGAUg -3'
miRNA:   3'- -CCCUGGCAC----UGCUGCu---UCG----UGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 6147 0.66 0.774919
Target:  5'- -cGAcCCGUGACGcGCGAGcauucGCACCG-UCa -3'
miRNA:   3'- ccCU-GGCACUGC-UGCUU-----CGUGGCuAG- -5'
19583 5' -54.6 NC_004686.1 + 13929 0.66 0.774919
Target:  5'- cGGGGCCG--GCGcaaacCGAGGUGCCGuUCg -3'
miRNA:   3'- -CCCUGGCacUGCu----GCUUCGUGGCuAG- -5'
19583 5' -54.6 NC_004686.1 + 20097 0.66 0.764903
Target:  5'- cGGuGGCCGUGaACGGuuuCGucGCugaACCGAUCc -3'
miRNA:   3'- -CC-CUGGCAC-UGCU---GCuuCG---UGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 22359 0.66 0.764903
Target:  5'- cGGGcggcaGCgGUGACGgcuccaaugGCGGcaccGGCACCGAUg -3'
miRNA:   3'- -CCC-----UGgCACUGC---------UGCU----UCGUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 8020 0.66 0.764903
Target:  5'- -cGAuCCGUcACGAUGAGGCGCCGc-- -3'
miRNA:   3'- ccCU-GGCAcUGCUGCUUCGUGGCuag -5'
19583 5' -54.6 NC_004686.1 + 49311 0.67 0.754754
Target:  5'- cGGACCGacguGCGACGAAGCGaacgCGcUCa -3'
miRNA:   3'- cCCUGGCac--UGCUGCUUCGUg---GCuAG- -5'
19583 5' -54.6 NC_004686.1 + 40695 0.67 0.754753
Target:  5'- uGGucgaaCGUGGCGGCGucGCaACCGGUg -3'
miRNA:   3'- cCCug---GCACUGCUGCuuCG-UGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 33837 0.67 0.744481
Target:  5'- aGGGCUGcGACGGCGAcuuGgGCCGGg- -3'
miRNA:   3'- cCCUGGCaCUGCUGCUu--CgUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 26729 0.67 0.743448
Target:  5'- --cGCCGUGAuCGGCGAgaaacucGGCAUCGAa- -3'
miRNA:   3'- cccUGGCACU-GCUGCU-------UCGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 7913 0.67 0.734097
Target:  5'- aGGaGACCGUGGCGgucaccugcuGCGAGuCGaauCCGGUCg -3'
miRNA:   3'- -CC-CUGGCACUGC----------UGCUUcGU---GGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 72 0.67 0.723613
Target:  5'- cGGGAUCGUcGGCGGgcUGAGGUucGCCGGc- -3'
miRNA:   3'- -CCCUGGCA-CUGCU--GCUUCG--UGGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.