miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19584 3' -57.9 NC_004686.1 + 16701 1.1 0.000481
Target:  5'- cCGGCAGCACCGACCACCCACGACAACg -3'
miRNA:   3'- -GCCGUCGUGGCUGGUGGGUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 40716 0.79 0.087987
Target:  5'- uGGCAGCGuucCCGGCCGCCCugGuCGAa -3'
miRNA:   3'- gCCGUCGU---GGCUGGUGGGugCuGUUg -5'
19584 3' -57.9 NC_004686.1 + 12340 0.76 0.144642
Target:  5'- gGGCGGCuauGCCGGCgG-CCACGACGACc -3'
miRNA:   3'- gCCGUCG---UGGCUGgUgGGUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 10204 0.76 0.152686
Target:  5'- uGGUGGUAUCGguacccucaccACCGCCCugGACAACc -3'
miRNA:   3'- gCCGUCGUGGC-----------UGGUGGGugCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 22384 0.75 0.170001
Target:  5'- uGGCGGCACCGG-CACCgAUGGCuACa -3'
miRNA:   3'- gCCGUCGUGGCUgGUGGgUGCUGuUG- -5'
19584 3' -57.9 NC_004686.1 + 51730 0.74 0.189051
Target:  5'- gCGGCGGCACCGACCuCUUcagggACGuCGGCg -3'
miRNA:   3'- -GCCGUCGUGGCUGGuGGG-----UGCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 10246 0.74 0.197701
Target:  5'- aCGGCAcaccaaguaacgucGCGCCGAgCCGCCCcaaGGCGGCg -3'
miRNA:   3'- -GCCGU--------------CGUGGCU-GGUGGGug-CUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 49055 0.73 0.215481
Target:  5'- cCGGCGGCAgCGAggaCGCCCugGugguCAGCg -3'
miRNA:   3'- -GCCGUCGUgGCUg--GUGGGugCu---GUUG- -5'
19584 3' -57.9 NC_004686.1 + 14893 0.73 0.238851
Target:  5'- aGGCAuGCugUGcCCGCCCACGuuGACc -3'
miRNA:   3'- gCCGU-CGugGCuGGUGGGUGCugUUG- -5'
19584 3' -57.9 NC_004686.1 + 39737 0.73 0.238851
Target:  5'- aGGCGGC-CCG-CCugCUcgACGACGGCg -3'
miRNA:   3'- gCCGUCGuGGCuGGugGG--UGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 45118 0.72 0.264302
Target:  5'- uCGGCAGUAgggguugauuUCGACCuguCCUACGACAGu -3'
miRNA:   3'- -GCCGUCGU----------GGCUGGu--GGGUGCUGUUg -5'
19584 3' -57.9 NC_004686.1 + 10765 0.71 0.29191
Target:  5'- -cGCGGCGCaaGCCGCCCugGACGc- -3'
miRNA:   3'- gcCGUCGUGgcUGGUGGGugCUGUug -5'
19584 3' -57.9 NC_004686.1 + 10898 0.71 0.299156
Target:  5'- cCGGCggGGUACaCG-CCGCCCACaACAACu -3'
miRNA:   3'- -GCCG--UCGUG-GCuGGUGGGUGcUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 12021 0.71 0.314061
Target:  5'- aGcGCGGCACCaucACUGCCCugGACGGg -3'
miRNA:   3'- gC-CGUCGUGGc--UGGUGGGugCUGUUg -5'
19584 3' -57.9 NC_004686.1 + 38502 0.71 0.314061
Target:  5'- gCGGCgAGUccgggGCCGAUgaUGCCCGCGGCGAUg -3'
miRNA:   3'- -GCCG-UCG-----UGGCUG--GUGGGUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 56062 0.71 0.321723
Target:  5'- gCGGUucGGCACCcgcGACCgguggACCCGCGACGc- -3'
miRNA:   3'- -GCCG--UCGUGG---CUGG-----UGGGUGCUGUug -5'
19584 3' -57.9 NC_004686.1 + 22185 0.71 0.321723
Target:  5'- cCGGCGGCAaCGGCgGCaaCgGCGGCAGCa -3'
miRNA:   3'- -GCCGUCGUgGCUGgUG--GgUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 9226 0.71 0.321723
Target:  5'- uCGGCGGCGCCGugCACagaa-ACAACg -3'
miRNA:   3'- -GCCGUCGUGGCugGUGggugcUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 13469 0.7 0.329523
Target:  5'- cCGGCAGCGUCGGgguuCCGCCgGUGACAACc -3'
miRNA:   3'- -GCCGUCGUGGCU----GGUGGgUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 55174 0.7 0.337461
Target:  5'- cCGGCAGcCGCCGA-CGCCCACcaaauccgcaagGACcGCa -3'
miRNA:   3'- -GCCGUC-GUGGCUgGUGGGUG------------CUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.