miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19584 3' -57.9 NC_004686.1 + 25446 0.68 0.462574
Target:  5'- gCGGCaAGCcuugucGCCGACC-UCCGCGucCGACa -3'
miRNA:   3'- -GCCG-UCG------UGGCUGGuGGGUGCu-GUUG- -5'
19584 3' -57.9 NC_004686.1 + 8896 0.7 0.362105
Target:  5'- gGGCcauccGCGCCGACCuccucGCCCGCGGaugGACc -3'
miRNA:   3'- gCCGu----CGUGGCUGG-----UGGGUGCUg--UUG- -5'
19584 3' -57.9 NC_004686.1 + 22023 0.69 0.387971
Target:  5'- aGGaCGGCGCCGACgGCggCGCGuCGACa -3'
miRNA:   3'- gCC-GUCGUGGCUGgUGg-GUGCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 22264 0.69 0.39686
Target:  5'- gGGCGGCGgCGGCaagcuguCCaACGACAACa -3'
miRNA:   3'- gCCGUCGUgGCUGgu-----GGgUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 34714 0.69 0.424294
Target:  5'- uCGGUGGCAgCGgcagaaguucGCCGgCUACGGCAACc -3'
miRNA:   3'- -GCCGUCGUgGC----------UGGUgGGUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 40343 0.68 0.440335
Target:  5'- cCGGCAugccugaagaagucGCAUCGAUCgAUCCugGACAAg -3'
miRNA:   3'- -GCCGU--------------CGUGGCUGG-UGGGugCUGUUg -5'
19584 3' -57.9 NC_004686.1 + 11502 0.68 0.443202
Target:  5'- uGGUGGCG-CGAUC-CCCGCGAuCGACu -3'
miRNA:   3'- gCCGUCGUgGCUGGuGGGUGCU-GUUG- -5'
19584 3' -57.9 NC_004686.1 + 5920 0.68 0.443202
Target:  5'- cCGGUGGCuAUCGGCUGCCgGCGaaacguGCAGCg -3'
miRNA:   3'- -GCCGUCG-UGGCUGGUGGgUGC------UGUUG- -5'
19584 3' -57.9 NC_004686.1 + 51086 0.68 0.451863
Target:  5'- gCGGCGGCAuucucguCCG-CCGCgaggcuguaCCugGACAGCc -3'
miRNA:   3'- -GCCGUCGU-------GGCuGGUG---------GGugCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 16103 0.7 0.353753
Target:  5'- ---gAGCugUGcGCCGCCUACGGCAACg -3'
miRNA:   3'- gccgUCGugGC-UGGUGGGUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 55174 0.7 0.337461
Target:  5'- cCGGCAGcCGCCGA-CGCCCACcaaauccgcaagGACcGCa -3'
miRNA:   3'- -GCCGUC-GUGGCUgGUGGGUG------------CUGuUG- -5'
19584 3' -57.9 NC_004686.1 + 22185 0.71 0.321723
Target:  5'- cCGGCGGCAaCGGCgGCaaCgGCGGCAGCa -3'
miRNA:   3'- -GCCGUCGUgGCUGgUG--GgUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 10204 0.76 0.152686
Target:  5'- uGGUGGUAUCGguacccucaccACCGCCCugGACAACc -3'
miRNA:   3'- gCCGUCGUGGC-----------UGGUGGGugCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 22384 0.75 0.170001
Target:  5'- uGGCGGCACCGG-CACCgAUGGCuACa -3'
miRNA:   3'- gCCGUCGUGGCUgGUGGgUGCUGuUG- -5'
19584 3' -57.9 NC_004686.1 + 49055 0.73 0.215481
Target:  5'- cCGGCGGCAgCGAggaCGCCCugGugguCAGCg -3'
miRNA:   3'- -GCCGUCGUgGCUg--GUGGGugCu---GUUG- -5'
19584 3' -57.9 NC_004686.1 + 39737 0.73 0.238851
Target:  5'- aGGCGGC-CCG-CCugCUcgACGACGGCg -3'
miRNA:   3'- gCCGUCGuGGCuGGugGG--UGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 10765 0.71 0.29191
Target:  5'- -cGCGGCGCaaGCCGCCCugGACGc- -3'
miRNA:   3'- gcCGUCGUGgcUGGUGGGugCUGUug -5'
19584 3' -57.9 NC_004686.1 + 10898 0.71 0.299156
Target:  5'- cCGGCggGGUACaCG-CCGCCCACaACAACu -3'
miRNA:   3'- -GCCG--UCGUG-GCuGGUGGGUGcUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 56062 0.71 0.321723
Target:  5'- gCGGUucGGCACCcgcGACCgguggACCCGCGACGc- -3'
miRNA:   3'- -GCCG--UCGUGG---CUGG-----UGGGUGCUGUug -5'
19584 3' -57.9 NC_004686.1 + 9226 0.71 0.321723
Target:  5'- uCGGCGGCGCCGugCACagaa-ACAACg -3'
miRNA:   3'- -GCCGUCGUGGCugGUGggugcUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.