miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19584 3' -57.9 NC_004686.1 + 2186 0.69 0.424294
Target:  5'- gGGCGGCgagcggucaucGCCGcauacACCGCCCcCGACAu- -3'
miRNA:   3'- gCCGUCG-----------UGGC-----UGGUGGGuGCUGUug -5'
19584 3' -57.9 NC_004686.1 + 2879 0.66 0.551423
Target:  5'- aCGGCAacaccuGCGCCGGCaCACCguaaacaugcucauCACGGuCGACc -3'
miRNA:   3'- -GCCGU------CGUGGCUG-GUGG--------------GUGCU-GUUG- -5'
19584 3' -57.9 NC_004686.1 + 3937 0.67 0.544048
Target:  5'- gGGCAGUuucaacgguuCCG-CCACCCAccCGGcCAGCg -3'
miRNA:   3'- gCCGUCGu---------GGCuGGUGGGU--GCU-GUUG- -5'
19584 3' -57.9 NC_004686.1 + 4205 0.69 0.424294
Target:  5'- cCGGCAaCGCuUGACCACCCcacgccGgGACAGCc -3'
miRNA:   3'- -GCCGUcGUG-GCUGGUGGG------UgCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 5920 0.68 0.443202
Target:  5'- cCGGUGGCuAUCGGCUGCCgGCGaaacguGCAGCg -3'
miRNA:   3'- -GCCGUCG-UGGCUGGUGGgUGC------UGUUG- -5'
19584 3' -57.9 NC_004686.1 + 5995 0.66 0.575856
Target:  5'- cCGGCAGCcgauagccACCGGCCAgacgcgcauccuUCUugGACucGGCg -3'
miRNA:   3'- -GCCGUCG--------UGGCUGGU------------GGGugCUG--UUG- -5'
19584 3' -57.9 NC_004686.1 + 7877 0.66 0.565199
Target:  5'- cCGGCAcCACaaucaaGACUACgCAgGACAACu -3'
miRNA:   3'- -GCCGUcGUGg-----CUGGUGgGUgCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 8229 0.68 0.443202
Target:  5'- aGGguGUACUGaACCAgCUcggACGACAGCc -3'
miRNA:   3'- gCCguCGUGGC-UGGUgGG---UGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 8896 0.7 0.362105
Target:  5'- gGGCcauccGCGCCGACCuccucGCCCGCGGaugGACc -3'
miRNA:   3'- gCCGu----CGUGGCUGG-----UGGGUGCUg--UUG- -5'
19584 3' -57.9 NC_004686.1 + 9226 0.71 0.321723
Target:  5'- uCGGCGGCGCCGugCACagaa-ACAACg -3'
miRNA:   3'- -GCCGUCGUGGCugGUGggugcUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 9261 0.67 0.512835
Target:  5'- cCGGUGGCuaacggaacugaACUGGCCgucGCCUACGuCAGCa -3'
miRNA:   3'- -GCCGUCG------------UGGCUGG---UGGGUGCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 10204 0.76 0.152686
Target:  5'- uGGUGGUAUCGguacccucaccACCGCCCugGACAACc -3'
miRNA:   3'- gCCGUCGUGGC-----------UGGUGGGugCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 10246 0.74 0.197701
Target:  5'- aCGGCAcaccaaguaacgucGCGCCGAgCCGCCCcaaGGCGGCg -3'
miRNA:   3'- -GCCGU--------------CGUGGCU-GGUGGGug-CUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 10421 0.66 0.597295
Target:  5'- uGGCAG-GCCGAuauCCGCggggaCCACGACAc- -3'
miRNA:   3'- gCCGUCgUGGCU---GGUG-----GGUGCUGUug -5'
19584 3' -57.9 NC_004686.1 + 10765 0.71 0.29191
Target:  5'- -cGCGGCGCaaGCCGCCCugGACGc- -3'
miRNA:   3'- gcCGUCGUGgcUGGUGGGugCUGUug -5'
19584 3' -57.9 NC_004686.1 + 10898 0.71 0.299156
Target:  5'- cCGGCggGGUACaCG-CCGCCCACaACAACu -3'
miRNA:   3'- -GCCG--UCGUG-GCuGGUGGGUGcUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 11248 0.67 0.533569
Target:  5'- cCGGggaucgcacCGGCGCgGAUCGCCgCACG-CAACg -3'
miRNA:   3'- -GCC---------GUCGUGgCUGGUGG-GUGCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 11317 0.7 0.337461
Target:  5'- uCGGUAGCACCGAUUuccuggucgAUCCACGG-AACg -3'
miRNA:   3'- -GCCGUCGUGGCUGG---------UGGGUGCUgUUG- -5'
19584 3' -57.9 NC_004686.1 + 11502 0.68 0.443202
Target:  5'- uGGUGGCG-CGAUC-CCCGCGAuCGACu -3'
miRNA:   3'- gCCGUCGUgGCUGGuGGGUGCU-GUUG- -5'
19584 3' -57.9 NC_004686.1 + 11995 0.7 0.353753
Target:  5'- nGGUugcccaccGGCACCGACCGgCCCAggaGGCAGa -3'
miRNA:   3'- gCCG--------UCGUGGCUGGU-GGGUg--CUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.