miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19585 5' -56.3 NC_004686.1 + 33874 0.66 0.66162
Target:  5'- ---gGCCGGCCGCgAGgGCGAgGaUGa -3'
miRNA:   3'- acaaCGGCCGGCGgUUgCGUUgUgAC- -5'
19585 5' -56.3 NC_004686.1 + 52887 0.66 0.66162
Target:  5'- ---cGUCGGgCGCCAggaucaugcgGCGCAugGCUc -3'
miRNA:   3'- acaaCGGCCgGCGGU----------UGCGUugUGAc -5'
19585 5' -56.3 NC_004686.1 + 56129 0.66 0.639603
Target:  5'- --gUGCCGaaCCGCCAG-GCGACGCg- -3'
miRNA:   3'- acaACGGCc-GGCGGUUgCGUUGUGac -5'
19585 5' -56.3 NC_004686.1 + 40710 0.66 0.639603
Target:  5'- cGUUcCCGGCCGCCcuggucgaacGugGCGGCGu-- -3'
miRNA:   3'- aCAAcGGCCGGCGG----------UugCGUUGUgac -5'
19585 5' -56.3 NC_004686.1 + 22158 0.66 0.639603
Target:  5'- -uUUGCCgcccuGGCCGCCGuucgcggugaGCGACACg- -3'
miRNA:   3'- acAACGG-----CCGGCGGUug--------CGUUGUGac -5'
19585 5' -56.3 NC_004686.1 + 40785 0.66 0.638501
Target:  5'- uUGUUGUCugaggGGCCGCCuuugcaguuccugGAcCGCGaaGCGCUGg -3'
miRNA:   3'- -ACAACGG-----CCGGCGG-------------UU-GCGU--UGUGAC- -5'
19585 5' -56.3 NC_004686.1 + 483 0.66 0.628579
Target:  5'- ---cGCCGGUugaccgcccggCGUCGGCGUAACGCg- -3'
miRNA:   3'- acaaCGGCCG-----------GCGGUUGCGUUGUGac -5'
19585 5' -56.3 NC_004686.1 + 11234 0.66 0.628579
Target:  5'- ---gGCgCGGaUCGCCGcACGCAACGCa- -3'
miRNA:   3'- acaaCG-GCC-GGCGGU-UGCGUUGUGac -5'
19585 5' -56.3 NC_004686.1 + 22369 0.66 0.617558
Target:  5'- uUGUUGCC-GCCGCUGAUGguGUugUGu -3'
miRNA:   3'- -ACAACGGcCGGCGGUUGCguUGugAC- -5'
19585 5' -56.3 NC_004686.1 + 5517 0.66 0.617558
Target:  5'- ---cGCCGGCC-UgAACGCGGCGgUGu -3'
miRNA:   3'- acaaCGGCCGGcGgUUGCGUUGUgAC- -5'
19585 5' -56.3 NC_004686.1 + 18458 0.66 0.617558
Target:  5'- cGUggcuuCCGGUgaCGCagAACGCGACGCUGg -3'
miRNA:   3'- aCAac---GGCCG--GCGg-UUGCGUUGUGAC- -5'
19585 5' -56.3 NC_004686.1 + 42845 0.67 0.595565
Target:  5'- ---aGcCCGcGCCGCCAACGCcuC-CUGa -3'
miRNA:   3'- acaaC-GGC-CGGCGGUUGCGuuGuGAC- -5'
19585 5' -56.3 NC_004686.1 + 39029 0.67 0.58461
Target:  5'- --gUGCCaGCuCGCC-ACGCuugauGCGCUGg -3'
miRNA:   3'- acaACGGcCG-GCGGuUGCGu----UGUGAC- -5'
19585 5' -56.3 NC_004686.1 + 48968 0.67 0.573695
Target:  5'- ---cGCCGuCCGCCGugGCGUAGCcCUGa -3'
miRNA:   3'- acaaCGGCcGGCGGU--UGCGUUGuGAC- -5'
19585 5' -56.3 NC_004686.1 + 53554 0.67 0.573695
Target:  5'- ----aCCGGCCGgCAGCGCGAacCGCUc -3'
miRNA:   3'- acaacGGCCGGCgGUUGCGUU--GUGAc -5'
19585 5' -56.3 NC_004686.1 + 39747 0.67 0.562828
Target:  5'- cUGaUGCCGuGCCGCacccucaccCGUGACACUGu -3'
miRNA:   3'- -ACaACGGC-CGGCGguu------GCGUUGUGAC- -5'
19585 5' -56.3 NC_004686.1 + 28684 0.67 0.562828
Target:  5'- ---aGCCu-CCGCCAACGCAGCAg-- -3'
miRNA:   3'- acaaCGGccGGCGGUUGCGUUGUgac -5'
19585 5' -56.3 NC_004686.1 + 21166 0.68 0.530594
Target:  5'- cGUUGuuCCGcGCCGCgGGgGCuGGCACUGg -3'
miRNA:   3'- aCAAC--GGC-CGGCGgUUgCG-UUGUGAC- -5'
19585 5' -56.3 NC_004686.1 + 49960 0.68 0.509481
Target:  5'- --aUGCgGGCCGaCCGGCGCcgUACg- -3'
miRNA:   3'- acaACGgCCGGC-GGUUGCGuuGUGac -5'
19585 5' -56.3 NC_004686.1 + 54869 0.68 0.495947
Target:  5'- ---cGCCGGcCCGCCAAC-CugaaaccgucaucgAACACUGg -3'
miRNA:   3'- acaaCGGCC-GGCGGUUGcG--------------UUGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.