miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19592 5' -49.4 NC_004686.1 + 36779 0.65 0.971428
Target:  5'- cCCCGGAAauagaacUGAUGaggaGUACG-CGCCGuGg -3'
miRNA:   3'- -GGGUUUU-------AUUACg---CGUGCuGCGGCuC- -5'
19592 5' -49.4 NC_004686.1 + 38495 0.66 0.9685
Target:  5'- gUCCGGggccGAUGAUGCcCGCGGCGauGAGc -3'
miRNA:   3'- -GGGUU----UUAUUACGcGUGCUGCggCUC- -5'
19592 5' -49.4 NC_004686.1 + 38548 0.66 0.9685
Target:  5'- gCCAAAAaAGucUGCGCccuccuCGACGCUGGa -3'
miRNA:   3'- gGGUUUUaUU--ACGCGu-----GCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 6146 0.66 0.968162
Target:  5'- uCCUGAucggcgcGGUGAUGCGCugGucgcaaGCCGGa -3'
miRNA:   3'- -GGGUU-------UUAUUACGCGugCug----CGGCUc -5'
19592 5' -49.4 NC_004686.1 + 52051 0.66 0.965003
Target:  5'- gUCGcGGAUGAUGuCG-ACGGCGUCGAGg -3'
miRNA:   3'- gGGU-UUUAUUAC-GCgUGCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 52432 0.66 0.965003
Target:  5'- aCCAuuGAAUGGUGCGgGCGAaaUGgCGAa -3'
miRNA:   3'- gGGU--UUUAUUACGCgUGCU--GCgGCUc -5'
19592 5' -49.4 NC_004686.1 + 34549 0.66 0.961243
Target:  5'- aCgCGAAGUc-UGUGCGCGAUGCgGAu -3'
miRNA:   3'- -GgGUUUUAuuACGCGUGCUGCGgCUc -5'
19592 5' -49.4 NC_004686.1 + 40585 0.66 0.957212
Target:  5'- cUCCGcGAccUAGUGCGUugACGACGCUGc- -3'
miRNA:   3'- -GGGUuUU--AUUACGCG--UGCUGCGGCuc -5'
19592 5' -49.4 NC_004686.1 + 42587 0.67 0.952903
Target:  5'- gCCgGGGAUAAUGCcaGCGugGaCCGAa -3'
miRNA:   3'- -GGgUUUUAUUACGcgUGCugC-GGCUc -5'
19592 5' -49.4 NC_004686.1 + 52895 0.67 0.938264
Target:  5'- gCCAGGAUcauGcgGCGCAUGGCucGCCGc- -3'
miRNA:   3'- gGGUUUUA---UuaCGCGUGCUG--CGGCuc -5'
19592 5' -49.4 NC_004686.1 + 5772 0.67 0.938264
Target:  5'- gUCGAcc-GAUGCGUucgcugugguccGCGACGCCGAc -3'
miRNA:   3'- gGGUUuuaUUACGCG------------UGCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 54488 0.68 0.929383
Target:  5'- aCCGGcauuuguugcgcGAUcAUGCGCAacguuuugcccugccCGACGCCGAa -3'
miRNA:   3'- gGGUU------------UUAuUACGCGU---------------GCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 3893 0.68 0.920992
Target:  5'- cCCCAAGAUccucGAUGgGUucaACGAuCGCgGAGa -3'
miRNA:   3'- -GGGUUUUA----UUACgCG---UGCU-GCGgCUC- -5'
19592 5' -49.4 NC_004686.1 + 12595 0.68 0.920992
Target:  5'- aCCAGGGUGGcGUGCugGAa-CCGGGa -3'
miRNA:   3'- gGGUUUUAUUaCGCGugCUgcGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 19397 0.68 0.901074
Target:  5'- gCCCAGuGGUGGUG-GUAUcGCGCCGGGu -3'
miRNA:   3'- -GGGUU-UUAUUACgCGUGcUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 20513 0.69 0.893855
Target:  5'- aCCCGAcGUAuccgcauUGCGCugGGuCGCUGGu -3'
miRNA:   3'- -GGGUUuUAUu------ACGCGugCU-GCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 43661 0.69 0.893855
Target:  5'- gCCCAucauUGcgGCGCugGugGCUaucacuGAGg -3'
miRNA:   3'- -GGGUuuu-AUuaCGCGugCugCGG------CUC- -5'
19592 5' -49.4 NC_004686.1 + 50055 0.69 0.893855
Target:  5'- gUCCAcAGUGAcucccCGUACGGCGCCGGu -3'
miRNA:   3'- -GGGUuUUAUUac---GCGUGCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 22119 0.69 0.886354
Target:  5'- aCCCGAGGUGAaugucgacGCGCcgccguCGGCGCCGu- -3'
miRNA:   3'- -GGGUUUUAUUa-------CGCGu-----GCUGCGGCuc -5'
19592 5' -49.4 NC_004686.1 + 49136 0.69 0.88405
Target:  5'- aUCCGGGAUugcacguggcuguuGAucUGCGCGacgggGACGCCGAGu -3'
miRNA:   3'- -GGGUUUUA--------------UU--ACGCGUg----CUGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.