miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19593 5' -64.6 NC_004686.1 + 21971 1.07 0.000216
Target:  5'- cCGCCACCGCCACCGCCGCCGCCGUAGc -3'
miRNA:   3'- -GCGGUGGCGGUGGCGGCGGCGGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 22265 0.84 0.013096
Target:  5'- cCGCCGuuGCCGCCGuuGCCGCCGg-- -3'
miRNA:   3'- -GCGGUggCGGUGGCggCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 48923 0.81 0.02218
Target:  5'- gGCCGCCGCCcuucucGCCGCUGCUGuuGUAGc -3'
miRNA:   3'- gCGGUGGCGG------UGGCGGCGGCggCAUC- -5'
19593 5' -64.6 NC_004686.1 + 12242 0.79 0.034198
Target:  5'- aCGCCGCCGCUggccccgcggccugACCGCCGgCGCCGa-- -3'
miRNA:   3'- -GCGGUGGCGG--------------UGGCGGCgGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 22444 0.78 0.036428
Target:  5'- cCGCCauuggaGCCGUCACCGCUGCCGCCc--- -3'
miRNA:   3'- -GCGG------UGGCGGUGGCGGCGGCGGcauc -5'
19593 5' -64.6 NC_004686.1 + 21916 0.77 0.0479
Target:  5'- aGCCGCCGCC-CgCGCCcgcGCCGCCG-AGg -3'
miRNA:   3'- gCGGUGGCGGuG-GCGG---CGGCGGCaUC- -5'
19593 5' -64.6 NC_004686.1 + 9779 0.76 0.051982
Target:  5'- uGCCaacacuGCCGCCACUGCgguCGCCGCCGgcGu -3'
miRNA:   3'- gCGG------UGGCGGUGGCG---GCGGCGGCauC- -5'
19593 5' -64.6 NC_004686.1 + 22100 0.76 0.059548
Target:  5'- gCGCCGCCGUCGgCGCCGUCcuuGCCGUc- -3'
miRNA:   3'- -GCGGUGGCGGUgGCGGCGG---CGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 31662 0.76 0.060197
Target:  5'- uGCUcauccacaccauucgACCGCagCACCGUCGCCGCCGUAu -3'
miRNA:   3'- gCGG---------------UGGCG--GUGGCGGCGGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 22331 0.76 0.061184
Target:  5'- cCGCCGCCGCCcuuACCGCCaGCgcccgCGCCGUu- -3'
miRNA:   3'- -GCGGUGGCGG---UGGCGG-CG-----GCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 22052 0.74 0.08453
Target:  5'- cCGCCAgCGCCGCCGaguCCGCgCGUCGUu- -3'
miRNA:   3'- -GCGGUgGCGGUGGC---GGCG-GCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 3825 0.73 0.09158
Target:  5'- uCGUCguACCaGuCCGCCGCCGCCGCCaUGGc -3'
miRNA:   3'- -GCGG--UGG-C-GGUGGCGGCGGCGGcAUC- -5'
19593 5' -64.6 NC_004686.1 + 16422 0.73 0.102936
Target:  5'- uCGCCACCGUCACCGacugggagacaacuuCCacccccguGCCGCCGUu- -3'
miRNA:   3'- -GCGGUGGCGGUGGC---------------GG--------CGGCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 19545 0.71 0.122477
Target:  5'- aCGCCGCCGaCGCCGCCGgaaaCgGuuGUGGu -3'
miRNA:   3'- -GCGGUGGCgGUGGCGGC----GgCggCAUC- -5'
19593 5' -64.6 NC_004686.1 + 18907 0.71 0.125723
Target:  5'- gGUCucgUCGCgCACCGCCGCCGUCGa-- -3'
miRNA:   3'- gCGGu--GGCG-GUGGCGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 8037 0.7 0.146926
Target:  5'- gCGCCGCUGCCGCgGaaGUCGuUCGUGGu -3'
miRNA:   3'- -GCGGUGGCGGUGgCggCGGC-GGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 9325 0.7 0.14845
Target:  5'- aGCCACCgGCCACCucccguuguuucuguGCacggCGCCGCCGa-- -3'
miRNA:   3'- gCGGUGG-CGGUGG---------------CG----GCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 49956 0.7 0.15469
Target:  5'- uCGCCGCgGCCuuCGUCGCCGgCGa-- -3'
miRNA:   3'- -GCGGUGgCGGugGCGGCGGCgGCauc -5'
19593 5' -64.6 NC_004686.1 + 7197 0.7 0.162824
Target:  5'- aCGCCAgCGUCcUUGUgGCCGCCGUGc -3'
miRNA:   3'- -GCGGUgGCGGuGGCGgCGGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 12197 0.7 0.167034
Target:  5'- cCGCCGuuGCggcaGCCGaaGCCGCgGUAGc -3'
miRNA:   3'- -GCGGUggCGg---UGGCggCGGCGgCAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.