miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19593 5' -64.6 NC_004686.1 + 3259 0.66 0.314909
Target:  5'- aGaaAUCGCCACCGCCGUauCCGg-- -3'
miRNA:   3'- gCggUGGCGGUGGCGGCGgcGGCauc -5'
19593 5' -64.6 NC_004686.1 + 3825 0.73 0.09158
Target:  5'- uCGUCguACCaGuCCGCCGCCGCCGCCaUGGc -3'
miRNA:   3'- -GCGG--UGG-C-GGUGGCGGCGGCGGcAUC- -5'
19593 5' -64.6 NC_004686.1 + 5613 0.66 0.293733
Target:  5'- cCGCCAcggacgguguCCGaCACCGCCGCguucagGCCGgcGa -3'
miRNA:   3'- -GCGGU----------GGCgGUGGCGGCGg-----CGGCauC- -5'
19593 5' -64.6 NC_004686.1 + 6013 0.66 0.314909
Target:  5'- uCGCCGCUGCaCGuuUCGCCGgCaGCCGaUAGc -3'
miRNA:   3'- -GCGGUGGCG-GU--GGCGGCgG-CGGC-AUC- -5'
19593 5' -64.6 NC_004686.1 + 7197 0.7 0.162824
Target:  5'- aCGCCAgCGUCcUUGUgGCCGCCGUGc -3'
miRNA:   3'- -GCGGUgGCGGuGGCGgCGGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 8037 0.7 0.146926
Target:  5'- gCGCCGCUGCCGCgGaaGUCGuUCGUGGu -3'
miRNA:   3'- -GCGGUGGCGGUGgCggCGGC-GGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 8442 0.66 0.280243
Target:  5'- -cCCACUGUCGgugUCGuuGCCGCgGUGGg -3'
miRNA:   3'- gcGGUGGCGGU---GGCggCGGCGgCAUC- -5'
19593 5' -64.6 NC_004686.1 + 9325 0.7 0.14845
Target:  5'- aGCCACCgGCCACCucccguuguuucuguGCacggCGCCGCCGa-- -3'
miRNA:   3'- gCGGUGG-CGGUGG---------------CG----GCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 9590 0.68 0.220112
Target:  5'- uGCUGCagguGCUACUGCCGCUGUCGg-- -3'
miRNA:   3'- gCGGUGg---CGGUGGCGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 9779 0.76 0.051982
Target:  5'- uGCCaacacuGCCGCCACUGCgguCGCCGCCGgcGu -3'
miRNA:   3'- gCGG------UGGCGGUGGCG---GCGGCGGCauC- -5'
19593 5' -64.6 NC_004686.1 + 11112 0.68 0.225593
Target:  5'- gGCCGggGCCACCGaUCGgaCCGCCGUGa -3'
miRNA:   3'- gCGGUggCGGUGGC-GGC--GGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 12110 0.67 0.242731
Target:  5'- gGCUACCGCgGCUucgGCUGCCGCaaCGgcGg -3'
miRNA:   3'- gCGGUGGCGgUGG---CGGCGGCG--GCauC- -5'
19593 5' -64.6 NC_004686.1 + 12197 0.7 0.167034
Target:  5'- cCGCCGuuGCggcaGCCGaaGCCGCgGUAGc -3'
miRNA:   3'- -GCGGUggCGg---UGGCggCGGCGgCAUC- -5'
19593 5' -64.6 NC_004686.1 + 12242 0.79 0.034198
Target:  5'- aCGCCGCCGCUggccccgcggccugACCGCCGgCGCCGa-- -3'
miRNA:   3'- -GCGGUGGCGG--------------UGGCGGCgGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 14683 0.66 0.307724
Target:  5'- gGCCAguCCGUCAaaugCGgUGCCGCCGuUGGa -3'
miRNA:   3'- gCGGU--GGCGGUg---GCgGCGGCGGC-AUC- -5'
19593 5' -64.6 NC_004686.1 + 16422 0.73 0.102936
Target:  5'- uCGCCACCGUCACCGacugggagacaacuuCCacccccguGCCGCCGUu- -3'
miRNA:   3'- -GCGGUGGCGGUGGC---------------GG--------CGGCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 16591 0.66 0.314909
Target:  5'- gCGUaCACCGUCGuuGaaGUCGUCGUAGa -3'
miRNA:   3'- -GCG-GUGGCGGUggCggCGGCGGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 18907 0.71 0.125723
Target:  5'- gGUCucgUCGCgCACCGCCGCCGUCGa-- -3'
miRNA:   3'- gCGGu--GGCG-GUGGCGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 19289 0.67 0.254748
Target:  5'- uGUCGCCaCCAUUGCCGCCcacacCCGUAc -3'
miRNA:   3'- gCGGUGGcGGUGGCGGCGGc----GGCAUc -5'
19593 5' -64.6 NC_004686.1 + 19442 0.67 0.254748
Target:  5'- uGCCcgcCCGCCaaauACUGCuCGCCGuuGUAc -3'
miRNA:   3'- gCGGu--GGCGG----UGGCG-GCGGCggCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.