miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19593 5' -64.6 NC_004686.1 + 22751 0.66 0.280243
Target:  5'- gCGCCGCgGCUAUCGCgGUCaCCgGUGGu -3'
miRNA:   3'- -GCGGUGgCGGUGGCGgCGGcGG-CAUC- -5'
19593 5' -64.6 NC_004686.1 + 12110 0.67 0.242731
Target:  5'- gGCUACCGCgGCUucgGCUGCCGCaaCGgcGg -3'
miRNA:   3'- gCGGUGGCGgUGG---CGGCGGCG--GCauC- -5'
19593 5' -64.6 NC_004686.1 + 54989 0.67 0.242731
Target:  5'- gCGCCACCGCacaaACCGaCGCUGaCGUu- -3'
miRNA:   3'- -GCGGUGGCGg---UGGCgGCGGCgGCAuc -5'
19593 5' -64.6 NC_004686.1 + 31558 0.67 0.24868
Target:  5'- aCGUCAacaaCGCCugCaUCGCCGCCGa-- -3'
miRNA:   3'- -GCGGUg---GCGGugGcGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 54048 0.67 0.24868
Target:  5'- aCGCC-CCGCCACaccagCGCUGUuCGCCGc-- -3'
miRNA:   3'- -GCGGuGGCGGUG-----GCGGCG-GCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 22608 0.67 0.260938
Target:  5'- gGUCACCcCCACCGCCGggcagaUCGCCa--- -3'
miRNA:   3'- gCGGUGGcGGUGGCGGC------GGCGGcauc -5'
19593 5' -64.6 NC_004686.1 + 45704 0.67 0.26725
Target:  5'- gGCCACUGCaugauCACCGuuGCuugCGCCGa-- -3'
miRNA:   3'- gCGGUGGCG-----GUGGCggCG---GCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 28031 0.66 0.280243
Target:  5'- aGCCGCUgaagcgguguugGCguCCGUCGgcaucuCCGCCGUAGa -3'
miRNA:   3'- gCGGUGG------------CGguGGCGGC------GGCGGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 8442 0.66 0.280243
Target:  5'- -cCCACUGUCGgugUCGuuGCCGCgGUGGg -3'
miRNA:   3'- gcGGUGGCGGU---GGCggCGGCGgCAUC- -5'
19593 5' -64.6 NC_004686.1 + 38402 0.68 0.231188
Target:  5'- uGCCGCUGCuCAUCGCCGCgGgCa--- -3'
miRNA:   3'- gCGGUGGCG-GUGGCGGCGgCgGcauc -5'
19593 5' -64.6 NC_004686.1 + 35937 0.68 0.223937
Target:  5'- aGUgACCGUCugcuuuaugacaagGCUGCUGCCGCUGUGc -3'
miRNA:   3'- gCGgUGGCGG--------------UGGCGGCGGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 9590 0.68 0.220112
Target:  5'- uGCUGCagguGCUACUGCCGCUGUCGg-- -3'
miRNA:   3'- gCGGUGg---CGGUGGCGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 9779 0.76 0.051982
Target:  5'- uGCCaacacuGCCGCCACUGCgguCGCCGCCGgcGu -3'
miRNA:   3'- gCGG------UGGCGGUGGCG---GCGGCGGCauC- -5'
19593 5' -64.6 NC_004686.1 + 31662 0.76 0.060197
Target:  5'- uGCUcauccacaccauucgACCGCagCACCGUCGCCGCCGUAu -3'
miRNA:   3'- gCGG---------------UGGCG--GUGGCGGCGGCGGCAUc -5'
19593 5' -64.6 NC_004686.1 + 19545 0.71 0.122477
Target:  5'- aCGCCGCCGaCGCCGCCGgaaaCgGuuGUGGu -3'
miRNA:   3'- -GCGGUGGCgGUGGCGGC----GgCggCAUC- -5'
19593 5' -64.6 NC_004686.1 + 8037 0.7 0.146926
Target:  5'- gCGCCGCUGCCGCgGaaGUCGuUCGUGGu -3'
miRNA:   3'- -GCGGUGGCGGUGgCggCGGC-GGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 25233 0.69 0.171341
Target:  5'- -uCCACUGaUCGCCGCCGCUGCUGc-- -3'
miRNA:   3'- gcGGUGGC-GGUGGCGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 31196 0.69 0.171341
Target:  5'- gCGCCAUuucgUGCgGCCGUCGUCGCUGcGGg -3'
miRNA:   3'- -GCGGUG----GCGgUGGCGGCGGCGGCaUC- -5'
19593 5' -64.6 NC_004686.1 + 41349 0.69 0.194393
Target:  5'- uCGCCGCUGCUcuucUCGCUGCUGCUGcGGa -3'
miRNA:   3'- -GCGGUGGCGGu---GGCGGCGGCGGCaUC- -5'
19593 5' -64.6 NC_004686.1 + 29956 0.68 0.209492
Target:  5'- aGCCGCCGCCACa-CCGaCC-CCGgcugAGa -3'
miRNA:   3'- gCGGUGGCGGUGgcGGC-GGcGGCa---UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.