miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19598 5' -61.1 NC_004686.1 + 8654 0.66 0.444281
Target:  5'- gGUACuUGCGGGacucaaccugauaCCGGCGGaACUgGcGGCg -3'
miRNA:   3'- -CAUG-GCGUCC-------------GGCCGCC-UGAgCaCCG- -5'
19598 5' -61.1 NC_004686.1 + 53622 0.66 0.426683
Target:  5'- -cGCUGCcGGCCGGUuugguugcGGGuucgUUUGUGGCg -3'
miRNA:   3'- caUGGCGuCCGGCCG--------CCU----GAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 5395 0.66 0.425768
Target:  5'- gGUGCCGguGGUCagcugacgauguuGGUGGugUCGaGGa -3'
miRNA:   3'- -CAUGGCguCCGG-------------CCGCCugAGCaCCg -5'
19598 5' -61.1 NC_004686.1 + 14784 0.66 0.417589
Target:  5'- -aACCGCAGGuuGGggaGGAaguagUCGUucGGCu -3'
miRNA:   3'- caUGGCGUCCggCCg--CCUg----AGCA--CCG- -5'
19598 5' -61.1 NC_004686.1 + 22816 0.66 0.39976
Target:  5'- -aGCCGCGGcGCCGGgGGuuagGCggGUGaGCu -3'
miRNA:   3'- caUGGCGUC-CGGCCgCC----UGagCAC-CG- -5'
19598 5' -61.1 NC_004686.1 + 21883 0.66 0.39976
Target:  5'- gGUAUCGCuacGGCggCGGCGGugGCg-GUGGCg -3'
miRNA:   3'- -CAUGGCGu--CCG--GCCGCC--UGagCACCG- -5'
19598 5' -61.1 NC_004686.1 + 22206 0.66 0.39976
Target:  5'- gGUGCCGCcgAGGCCGcGCGcGccacuGCUCGacgaguUGGUg -3'
miRNA:   3'- -CAUGGCG--UCCGGC-CGC-C-----UGAGC------ACCG- -5'
19598 5' -61.1 NC_004686.1 + 7215 0.67 0.39103
Target:  5'- -cACCGCAGcgacgcugguacGCCaGCGucCUUGUGGCc -3'
miRNA:   3'- caUGGCGUC------------CGGcCGCcuGAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 32120 0.67 0.382425
Target:  5'- -gGCUGUGGGaaagCGGUGGAUggggUGUGGCc -3'
miRNA:   3'- caUGGCGUCCg---GCCGCCUGa---GCACCG- -5'
19598 5' -61.1 NC_004686.1 + 3984 0.67 0.373947
Target:  5'- --uCCGCAGGCC-GCGGAUacaUGcGGCg -3'
miRNA:   3'- cauGGCGUCCGGcCGCCUGa--GCaCCG- -5'
19598 5' -61.1 NC_004686.1 + 30084 0.67 0.357377
Target:  5'- -gACCGUuccAGGCCcGU--ACUCGUGGCa -3'
miRNA:   3'- caUGGCG---UCCGGcCGccUGAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 12889 0.68 0.34133
Target:  5'- aUAUCGCGGauccCCGGCuGACUCaUGGCc -3'
miRNA:   3'- cAUGGCGUCc---GGCCGcCUGAGcACCG- -5'
19598 5' -61.1 NC_004686.1 + 44971 0.68 0.333504
Target:  5'- -cACUGUucucAGGCauCGGCGGACUCGaacugGGUu -3'
miRNA:   3'- caUGGCG----UCCG--GCCGCCUGAGCa----CCG- -5'
19598 5' -61.1 NC_004686.1 + 52863 0.68 0.32581
Target:  5'- -gAUCGguGGCCGGuCGGAaugaaacgUCG-GGCg -3'
miRNA:   3'- caUGGCguCCGGCC-GCCUg-------AGCaCCG- -5'
19598 5' -61.1 NC_004686.1 + 15582 0.68 0.318248
Target:  5'- aGUACCGCAGGCCGucCGGuaaugaGC-CGcacUGGCu -3'
miRNA:   3'- -CAUGGCGUCCGGCc-GCC------UGaGC---ACCG- -5'
19598 5' -61.1 NC_004686.1 + 10526 0.69 0.282429
Target:  5'- aGUG-CGCAacucGuuGGCGGugUCGUGGUc -3'
miRNA:   3'- -CAUgGCGUc---CggCCGCCugAGCACCG- -5'
19598 5' -61.1 NC_004686.1 + 39474 0.69 0.262512
Target:  5'- --uCCGC-GGCCagGGuUGGACUCGUGaGCa -3'
miRNA:   3'- cauGGCGuCCGG--CC-GCCUGAGCAC-CG- -5'
19598 5' -61.1 NC_004686.1 + 7704 0.7 0.243753
Target:  5'- -gGCCGCAGGCCGGUccgcugauGACgaagCGUuuuucGGCg -3'
miRNA:   3'- caUGGCGUCCGGCCGc-------CUGa---GCA-----CCG- -5'
19598 5' -61.1 NC_004686.1 + 12526 0.7 0.228408
Target:  5'- -gGCCGCAGgcugccagccaGCCGGUGaccccggagcagaccGACUgGUGGCg -3'
miRNA:   3'- caUGGCGUC-----------CGGCCGC---------------CUGAgCACCG- -5'
19598 5' -61.1 NC_004686.1 + 17001 0.7 0.224419
Target:  5'- -cGCCgGCGGGUCGGCguaaucaugggugcGGACUgGUGGa -3'
miRNA:   3'- caUGG-CGUCCGGCCG--------------CCUGAgCACCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.