miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19642 5' -51.9 NC_004686.1 + 38769 0.66 0.891992
Target:  5'- cAGAgaaaUCGAUACCACCGaaaaucggcgacaaaAUAUCGUUg -3'
miRNA:   3'- -UCUagg-AGCUGUGGUGGU---------------UGUAGCAG- -5'
19642 5' -51.9 NC_004686.1 + 55486 0.66 0.884505
Target:  5'- cAGAUCCggGAacuCACCGCCggAugagguacgcgaucgGCAUCGUCg -3'
miRNA:   3'- -UCUAGGagCU---GUGGUGG--U---------------UGUAGCAG- -5'
19642 5' -51.9 NC_004686.1 + 30872 0.66 0.881434
Target:  5'- cAGAUCCgugcguacuuucUCGGCgACUuCCAGCA-CGUCa -3'
miRNA:   3'- -UCUAGG------------AGCUG-UGGuGGUUGUaGCAG- -5'
19642 5' -51.9 NC_004686.1 + 56124 0.66 0.865445
Target:  5'- cGAaCCUCaGC-CCGCCGACGaucccggaUCGUCg -3'
miRNA:   3'- uCUaGGAGcUGuGGUGGUUGU--------AGCAG- -5'
19642 5' -51.9 NC_004686.1 + 23925 0.66 0.865445
Target:  5'- gGGAgccaacCCUUGACGCgGCCGacaagGCAUCGg- -3'
miRNA:   3'- -UCUa-----GGAGCUGUGgUGGU-----UGUAGCag -5'
19642 5' -51.9 NC_004686.1 + 19528 0.66 0.865445
Target:  5'- cGGAgCCgguugauaCGACGCCGCCGACGcCGcCg -3'
miRNA:   3'- -UCUaGGa-------GCUGUGGUGGUUGUaGCaG- -5'
19642 5' -51.9 NC_004686.1 + 29164 0.67 0.848443
Target:  5'- cGGAUCCgggCGuuuCAacaaACCAACGUCGUa -3'
miRNA:   3'- -UCUAGGa--GCu--GUgg--UGGUUGUAGCAg -5'
19642 5' -51.9 NC_004686.1 + 1602 0.67 0.839582
Target:  5'- cAGGUCgCagUCGauguGCACCaaGCCGAUGUCGUCg -3'
miRNA:   3'- -UCUAG-G--AGC----UGUGG--UGGUUGUAGCAG- -5'
19642 5' -51.9 NC_004686.1 + 40682 0.67 0.830493
Target:  5'- aGGcgUUUCGACACCAUCcGCAgguaGUCg -3'
miRNA:   3'- -UCuaGGAGCUGUGGUGGuUGUag--CAG- -5'
19642 5' -51.9 NC_004686.1 + 23551 0.67 0.830493
Target:  5'- ---cCCUCGuCACCucgucauCCAACAUCGg- -3'
miRNA:   3'- ucuaGGAGCuGUGGu------GGUUGUAGCag -5'
19642 5' -51.9 NC_004686.1 + 37369 0.68 0.80196
Target:  5'- cGGUCUcgUCGcGCACCGCCGcCGUCGa- -3'
miRNA:   3'- uCUAGG--AGC-UGUGGUGGUuGUAGCag -5'
19642 5' -51.9 NC_004686.1 + 10136 0.68 0.80196
Target:  5'- cAGAaCCUUGACGCCGCCuuggGGCGgcUCGg- -3'
miRNA:   3'- -UCUaGGAGCUGUGGUGG----UUGU--AGCag -5'
19642 5' -51.9 NC_004686.1 + 10440 0.68 0.771758
Target:  5'- gGGA-CCaCGACACCGCCAACga-GUUg -3'
miRNA:   3'- -UCUaGGaGCUGUGGUGGUUGuagCAG- -5'
19642 5' -51.9 NC_004686.1 + 54536 0.68 0.771758
Target:  5'- uGAUCC-CGuACGCCGCC-ACAUCuUCc -3'
miRNA:   3'- uCUAGGaGC-UGUGGUGGuUGUAGcAG- -5'
19642 5' -51.9 NC_004686.1 + 50072 0.68 0.761374
Target:  5'- aGGAUCagcuUCGcCuCCGCCAACugGUCGUCa -3'
miRNA:   3'- -UCUAGg---AGCuGuGGUGGUUG--UAGCAG- -5'
19642 5' -51.9 NC_004686.1 + 28561 0.69 0.733758
Target:  5'- uGAUCCgggCGAUcgccgucugaucccgACCGgCAGCGUUGUCa -3'
miRNA:   3'- uCUAGGa--GCUG---------------UGGUgGUUGUAGCAG- -5'
19642 5' -51.9 NC_004686.1 + 49194 0.69 0.707622
Target:  5'- --uUCCUCGAacgccaccaCACCACCAGCcgAUCGg- -3'
miRNA:   3'- ucuAGGAGCU---------GUGGUGGUUG--UAGCag -5'
19642 5' -51.9 NC_004686.1 + 8796 0.69 0.707622
Target:  5'- -cAUCUUCGuCACCccgGCCAACA-CGUCg -3'
miRNA:   3'- ucUAGGAGCuGUGG---UGGUUGUaGCAG- -5'
19642 5' -51.9 NC_004686.1 + 53383 0.69 0.706522
Target:  5'- cGGAUCCggcaccggaacggUCGACACCACCAccggugccgcuGCcUgGUCu -3'
miRNA:   3'- -UCUAGG-------------AGCUGUGGUGGU-----------UGuAgCAG- -5'
19642 5' -51.9 NC_004686.1 + 36623 0.7 0.685495
Target:  5'- uGAUCCUCGAgaacgucuugccCACCAcaaccguuuCCGGCggCGUCg -3'
miRNA:   3'- uCUAGGAGCU------------GUGGU---------GGUUGuaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.