Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19684 | 3' | -54.7 | NC_004686.1 | + | 55905 | 0.66 | 0.715542 |
Target: 5'- aCAUgCUCaACAGCCugccgccCCGCACAUCc- -3' miRNA: 3'- aGUGgGAG-UGUCGGu------GGUGUGUAGuc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 55287 | 0.69 | 0.550171 |
Target: 5'- aCACCC-CACguuuugccGGCCuGCCGCGCAaugcUCAGg -3' miRNA: 3'- aGUGGGaGUG--------UCGG-UGGUGUGU----AGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 50655 | 0.7 | 0.517914 |
Target: 5'- aCGCCCUgAUcGCCAUCGCACAacuacUCAa -3' miRNA: 3'- aGUGGGAgUGuCGGUGGUGUGU-----AGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 50414 | 0.67 | 0.64959 |
Target: 5'- gUCGgCgUCGCGGaCCACagcgaACGCAUCGGu -3' miRNA: 3'- -AGUgGgAGUGUC-GGUGg----UGUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 50153 | 0.66 | 0.735915 |
Target: 5'- gCACCgUCaacccacacuGCGGCCAUCGCAuucgcggcgauguCAUCGGg -3' miRNA: 3'- aGUGGgAG----------UGUCGGUGGUGU-------------GUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 49177 | 0.67 | 0.687188 |
Target: 5'- aCAUCCuUCGCGgcggcuuccucgaacGCCACCACACcaccagccgAUCGGa -3' miRNA: 3'- aGUGGG-AGUGU---------------CGGUGGUGUG---------UAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 44864 | 0.7 | 0.496832 |
Target: 5'- aUCGCCC-CACuuGCCGCCuuCACuccaGUCAGg -3' miRNA: 3'- -AGUGGGaGUGu-CGGUGGu-GUG----UAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 44403 | 0.66 | 0.747539 |
Target: 5'- gCGCCCUUcgcccCAGCC-CCAUACAUgGa -3' miRNA: 3'- aGUGGGAGu----GUCGGuGGUGUGUAgUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 43739 | 0.68 | 0.627357 |
Target: 5'- gCACgCaacCugGGCCGCCGCGcCAUCGGc -3' miRNA: 3'- aGUGgGa--GugUCGGUGGUGU-GUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 42212 | 0.67 | 0.671757 |
Target: 5'- cCGCgCUCcauGCGGCC-CCACAUGUCGu -3' miRNA: 3'- aGUGgGAG---UGUCGGuGGUGUGUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 42115 | 0.68 | 0.638476 |
Target: 5'- gUCACCgucUUCGCGGuacuCCACCACACAcuuaUCAa -3' miRNA: 3'- -AGUGG---GAGUGUC----GGUGGUGUGU----AGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 40523 | 0.66 | 0.726308 |
Target: 5'- gUCAgCCg---GGCCACCGCAUcgCGGg -3' miRNA: 3'- -AGUgGGagugUCGGUGGUGUGuaGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 39322 | 0.68 | 0.627357 |
Target: 5'- -aGCCCUCAauaguguugcCGGCCGCCaACGCAaCAc -3' miRNA: 3'- agUGGGAGU----------GUCGGUGG-UGUGUaGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 38745 | 0.7 | 0.465963 |
Target: 5'- aCACCUcgCGCGGCUGCaCAC-CGUCAGa -3' miRNA: 3'- aGUGGGa-GUGUCGGUG-GUGuGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 38315 | 0.68 | 0.58302 |
Target: 5'- aCACCCggccacucCACAuCCGCCGCAC-UCGGc -3' miRNA: 3'- aGUGGGa-------GUGUcGGUGGUGUGuAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 38069 | 0.68 | 0.638476 |
Target: 5'- cCGCCCguUC-CuGCCGCCGCAcCAUUGGg -3' miRNA: 3'- aGUGGG--AGuGuCGGUGGUGU-GUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 36933 | 0.66 | 0.704693 |
Target: 5'- cCGCCCUCACA-CCGCaacucguGCACAcCGGu -3' miRNA: 3'- aGUGGGAGUGUcGGUGg------UGUGUaGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 35772 | 0.67 | 0.660687 |
Target: 5'- uUCGCCgUCGcCGGCCACgACGuuucCGUCAa -3' miRNA: 3'- -AGUGGgAGU-GUCGGUGgUGU----GUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 33952 | 0.67 | 0.660687 |
Target: 5'- cCGCCCUUACcGCCAgcgcCCGCGcCGUUGGu -3' miRNA: 3'- aGUGGGAGUGuCGGU----GGUGU-GUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 33278 | 0.67 | 0.693771 |
Target: 5'- uUCACCCcaagaUCAacaGGCCAagauaagacCCAuCACGUCGGg -3' miRNA: 3'- -AGUGGG-----AGUg--UCGGU---------GGU-GUGUAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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