miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19697 5' -59.4 NC_004686.1 + 39679 1.12 0.000236
Target:  5'- cGGCACGGCAUCAGCCGCGGCGAAGCCc -3'
miRNA:   3'- -CCGUGCCGUAGUCGGCGCCGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 23805 0.79 0.068841
Target:  5'- uGCACaccGCgAUCGGCCGCGGCGAgcggagAGCCg -3'
miRNA:   3'- cCGUGc--CG-UAGUCGGCGCCGCU------UCGG- -5'
19697 5' -59.4 NC_004686.1 + 33712 0.77 0.101507
Target:  5'- cGGUgACGGuCAUCGccGCCGgGGCGggGCUg -3'
miRNA:   3'- -CCG-UGCC-GUAGU--CGGCgCCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 24509 0.75 0.13328
Target:  5'- cGGCGCGGCAUaCGGCgGCGaCGguGCUg -3'
miRNA:   3'- -CCGUGCCGUA-GUCGgCGCcGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 7288 0.75 0.149987
Target:  5'- gGGCgGCGGCcagauuccgugcgccGUCcGCCGUGGCGuAGCCc -3'
miRNA:   3'- -CCG-UGCCG---------------UAGuCGGCGCCGCuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 21893 0.74 0.152407
Target:  5'- cGGCgGCGGCggUGGCgGUGGCGguGCCu -3'
miRNA:   3'- -CCG-UGCCGuaGUCGgCGCCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 44087 0.74 0.173993
Target:  5'- --uGCGGCAgccgaAGCCGCGGUagccgcagcaGAAGCCg -3'
miRNA:   3'- ccgUGCCGUag---UCGGCGCCG----------CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 22249 0.73 0.193183
Target:  5'- gGGCgcugGCGGUAagGGCgGCGGCGGcaAGCUg -3'
miRNA:   3'- -CCG----UGCCGUagUCGgCGCCGCU--UCGG- -5'
19697 5' -59.4 NC_004686.1 + 12149 0.73 0.198262
Target:  5'- cGGCGcCGGCgGUCAgGCCGCGG---GGCCa -3'
miRNA:   3'- -CCGU-GCCG-UAGU-CGGCGCCgcuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 118 0.72 0.219755
Target:  5'- uGCACGGCGUCgcggguccaccGGUCGCGGgugcCGAAccGCCa -3'
miRNA:   3'- cCGUGCCGUAG-----------UCGGCGCC----GCUU--CGG- -5'
19697 5' -59.4 NC_004686.1 + 8434 0.72 0.223715
Target:  5'- gGGCAagccccacuguCGGUGUCGuuGCCGCGGUgggacuuccucgauGAGGCCa -3'
miRNA:   3'- -CCGU-----------GCCGUAGU--CGGCGCCG--------------CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 4827 0.72 0.22543
Target:  5'- cGCGCGGaccuucuUCAGCgGCGGCGGuuCCu -3'
miRNA:   3'- cCGUGCCgu-----AGUCGgCGCCGCUucGG- -5'
19697 5' -59.4 NC_004686.1 + 17759 0.72 0.231229
Target:  5'- cGcCugGGCGUgGGgUGCGGCGAguccggGGCCg -3'
miRNA:   3'- cC-GugCCGUAgUCgGCGCCGCU------UCGG- -5'
19697 5' -59.4 NC_004686.1 + 5496 0.71 0.249384
Target:  5'- cGGCACGGaCGUCgcuuccuucgccGGCCugaacGCGGCGguGUCg -3'
miRNA:   3'- -CCGUGCC-GUAG------------UCGG-----CGCCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 10753 0.71 0.255692
Target:  5'- uGC-CGGCAcCc-CCGCGGCGcAAGCCg -3'
miRNA:   3'- cCGuGCCGUaGucGGCGCCGC-UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 32033 0.71 0.26213
Target:  5'- uGUugGGgGUgGGCCGCcuGGCGggGUUg -3'
miRNA:   3'- cCGugCCgUAgUCGGCG--CCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 35315 0.71 0.268036
Target:  5'- aGGCugccggugacuauGCGGUGUCGGauGCGGCGAAGgUg -3'
miRNA:   3'- -CCG-------------UGCCGUAGUCggCGCCGCUUCgG- -5'
19697 5' -59.4 NC_004686.1 + 8873 0.71 0.268699
Target:  5'- uGGCGCGGU-UCGGCUGCGGaaaccacGGGUCg -3'
miRNA:   3'- -CCGUGCCGuAGUCGGCGCCgc-----UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 6926 0.71 0.275401
Target:  5'- aGCGCGuacuUCAGCCGCGcGCucAGCCa -3'
miRNA:   3'- cCGUGCcgu-AGUCGGCGC-CGcuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 24437 0.71 0.275401
Target:  5'- aGCGCuGCGUgAagcGCUGCGGCGGcGGCCg -3'
miRNA:   3'- cCGUGcCGUAgU---CGGCGCCGCU-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.