miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19697 5' -59.4 NC_004686.1 + 51085 0.68 0.374756
Target:  5'- aGCgGCGGCAuucUCGuCCGCcGCGAGGCUg -3'
miRNA:   3'- cCG-UGCCGU---AGUcGGCGcCGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 4691 0.7 0.303544
Target:  5'- aGGCGaagaGGCucgCAGaCCGCGccGCGGAGCa -3'
miRNA:   3'- -CCGUg---CCGua-GUC-GGCGC--CGCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 49650 0.7 0.310917
Target:  5'- gGGCauGCGGCGaggaagaccgacUCAGCCGCGagcacgcaGCGcauguGGCCg -3'
miRNA:   3'- -CCG--UGCCGU------------AGUCGGCGC--------CGCu----UCGG- -5'
19697 5' -59.4 NC_004686.1 + 48700 0.7 0.318425
Target:  5'- gGGCcaGCGGCcguUCAgGCCcaggaauaccacGCGGuCGAAGCCc -3'
miRNA:   3'- -CCG--UGCCGu--AGU-CGG------------CGCC-GCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 35070 0.69 0.326068
Target:  5'- uGGCGucUGGUcgcugauguugAUCAGCCGaucuccgagGGUGAAGCCg -3'
miRNA:   3'- -CCGU--GCCG-----------UAGUCGGCg--------CCGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 21972 0.69 0.341761
Target:  5'- cGCGCGGacUCGGCgGCgcuGGCGguGCCa -3'
miRNA:   3'- cCGUGCCguAGUCGgCG---CCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 49878 0.69 0.357992
Target:  5'- cGC-CGGCGacgaaGGCCGCGGCGAAc-- -3'
miRNA:   3'- cCGuGCCGUag---UCGGCGCCGCUUcgg -5'
19697 5' -59.4 NC_004686.1 + 17453 0.69 0.366308
Target:  5'- --gACGGUGUgCAGCCGCG-CGAGGUg -3'
miRNA:   3'- ccgUGCCGUA-GUCGGCGCcGCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 10290 0.69 0.366308
Target:  5'- cGGCucuCGGUAa-GGCUGUGGUGuGGGCCg -3'
miRNA:   3'- -CCGu--GCCGUagUCGGCGCCGC-UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 33838 0.7 0.289204
Target:  5'- gGGCugcgACGGCGacuUgGGCCGgGGUGAcgcgaaGGCCg -3'
miRNA:   3'- -CCG----UGCCGU---AgUCGGCgCCGCU------UCGG- -5'
19697 5' -59.4 NC_004686.1 + 6399 0.7 0.282236
Target:  5'- cGGUGCGGUucuggcggGUCAGCCGaucuaCGaGCaGGAGCCa -3'
miRNA:   3'- -CCGUGCCG--------UAGUCGGC-----GC-CG-CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 24437 0.71 0.275401
Target:  5'- aGCGCuGCGUgAagcGCUGCGGCGGcGGCCg -3'
miRNA:   3'- cCGUGcCGUAgU---CGGCGCCGCU-UCGG- -5'
19697 5' -59.4 NC_004686.1 + 21893 0.74 0.152407
Target:  5'- cGGCgGCGGCggUGGCgGUGGCGguGCCu -3'
miRNA:   3'- -CCG-UGCCGuaGUCGgCGCCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 22249 0.73 0.193183
Target:  5'- gGGCgcugGCGGUAagGGCgGCGGCGGcaAGCUg -3'
miRNA:   3'- -CCG----UGCCGUagUCGgCGCCGCU--UCGG- -5'
19697 5' -59.4 NC_004686.1 + 12149 0.73 0.198262
Target:  5'- cGGCGcCGGCgGUCAgGCCGCGG---GGCCa -3'
miRNA:   3'- -CCGU-GCCG-UAGU-CGGCGCCgcuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 8434 0.72 0.223715
Target:  5'- gGGCAagccccacuguCGGUGUCGuuGCCGCGGUgggacuuccucgauGAGGCCa -3'
miRNA:   3'- -CCGU-----------GCCGUAGU--CGGCGCCG--------------CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 4827 0.72 0.22543
Target:  5'- cGCGCGGaccuucuUCAGCgGCGGCGGuuCCu -3'
miRNA:   3'- cCGUGCCgu-----AGUCGgCGCCGCUucGG- -5'
19697 5' -59.4 NC_004686.1 + 5496 0.71 0.249384
Target:  5'- cGGCACGGaCGUCgcuuccuucgccGGCCugaacGCGGCGguGUCg -3'
miRNA:   3'- -CCGUGCC-GUAG------------UCGG-----CGCCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 10753 0.71 0.255692
Target:  5'- uGC-CGGCAcCc-CCGCGGCGcAAGCCg -3'
miRNA:   3'- cCGuGCCGUaGucGGCGCCGC-UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 35315 0.71 0.268036
Target:  5'- aGGCugccggugacuauGCGGUGUCGGauGCGGCGAAGgUg -3'
miRNA:   3'- -CCG-------------UGCCGUAGUCggCGCCGCUUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.