miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19697 5' -59.4 NC_004686.1 + 118 0.72 0.219755
Target:  5'- uGCACGGCGUCgcggguccaccGGUCGCGGgugcCGAAccGCCa -3'
miRNA:   3'- cCGUGCCGUAG-----------UCGGCGCC----GCUU--CGG- -5'
19697 5' -59.4 NC_004686.1 + 245 0.66 0.49571
Target:  5'- aGGCgACGGUAUCGguccauguGCUGaUGGCGcGGUCg -3'
miRNA:   3'- -CCG-UGCCGUAGU--------CGGC-GCCGCuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 1064 0.66 0.49571
Target:  5'- cGCACGGCGauggAGUCGUguucGGUGAuGGCCa -3'
miRNA:   3'- cCGUGCCGUag--UCGGCG----CCGCU-UCGG- -5'
19697 5' -59.4 NC_004686.1 + 1960 0.67 0.446898
Target:  5'- cGGUA-GGCGUUGGggcuguguuCCGCGGCGuacuGGCUg -3'
miRNA:   3'- -CCGUgCCGUAGUC---------GGCGCCGCu---UCGG- -5'
19697 5' -59.4 NC_004686.1 + 2142 0.66 0.52613
Target:  5'- -uCGCGGCGaaCAGCgcuggUGUGGCGggGCg -3'
miRNA:   3'- ccGUGCCGUa-GUCG-----GCGCCGCuuCGg -5'
19697 5' -59.4 NC_004686.1 + 2793 0.68 0.374756
Target:  5'- aGGCAgCGGCAcCGGUgGUGGUGucGaCCg -3'
miRNA:   3'- -CCGU-GCCGUaGUCGgCGCCGCuuC-GG- -5'
19697 5' -59.4 NC_004686.1 + 3284 0.69 0.326068
Target:  5'- -aCACGGCgAUCAG--GCGGCG-AGCCa -3'
miRNA:   3'- ccGUGCCG-UAGUCggCGCCGCuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 3390 0.66 0.514889
Target:  5'- uGGCgggauccGCGGUAUCuGUCGaaguCGGCGcAGGCUg -3'
miRNA:   3'- -CCG-------UGCCGUAGuCGGC----GCCGC-UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 3491 0.67 0.446898
Target:  5'- cGGCACGGCAacuacUCcuGGCU--GGUGGAGCg -3'
miRNA:   3'- -CCGUGCCGU-----AG--UCGGcgCCGCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 4643 0.66 0.49571
Target:  5'- gGGCAUuuuuugagGGUGUUGGUgGCGGCGuuGAGCg -3'
miRNA:   3'- -CCGUG--------CCGUAGUCGgCGCCGC--UUCGg -5'
19697 5' -59.4 NC_004686.1 + 4691 0.7 0.303544
Target:  5'- aGGCGaagaGGCucgCAGaCCGCGccGCGGAGCa -3'
miRNA:   3'- -CCGUg---CCGua-GUC-GGCGC--CGCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 4827 0.72 0.22543
Target:  5'- cGCGCGGaccuucuUCAGCgGCGGCGGuuCCu -3'
miRNA:   3'- cCGUGCCgu-----AGUCGgCGCCGCUucGG- -5'
19697 5' -59.4 NC_004686.1 + 5092 0.67 0.455491
Target:  5'- aGGCuguccaGGUA-CAGCCucGCGGCGGAcgagaauGCCg -3'
miRNA:   3'- -CCGug----CCGUaGUCGG--CGCCGCUU-------CGG- -5'
19697 5' -59.4 NC_004686.1 + 5268 0.68 0.383334
Target:  5'- cGGUGCGGCucuGUCGGguUCGcCGGCGAAGauCCu -3'
miRNA:   3'- -CCGUGCCG---UAGUC--GGC-GCCGCUUC--GG- -5'
19697 5' -59.4 NC_004686.1 + 5496 0.71 0.249384
Target:  5'- cGGCACGGaCGUCgcuuccuucgccGGCCugaacGCGGCGguGUCg -3'
miRNA:   3'- -CCGUGCC-GUAG------------UCGG-----CGCCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 5753 0.67 0.424436
Target:  5'- uGUACGGCAUCGGCaucaugucgaccgaUGCGuucgcugugguccGCGAcGCCg -3'
miRNA:   3'- cCGUGCCGUAGUCG--------------GCGC-------------CGCUuCGG- -5'
19697 5' -59.4 NC_004686.1 + 5917 0.68 0.382471
Target:  5'- uGGC-CGGUggcuAUCGGCUGcCGGCGAaacgugcAGCg -3'
miRNA:   3'- -CCGuGCCG----UAGUCGGC-GCCGCU-------UCGg -5'
19697 5' -59.4 NC_004686.1 + 6399 0.7 0.282236
Target:  5'- cGGUGCGGUucuggcggGUCAGCCGaucuaCGaGCaGGAGCCa -3'
miRNA:   3'- -CCGUGCCG--------UAGUCGGC-----GC-CG-CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 6926 0.71 0.275401
Target:  5'- aGCGCGuacuUCAGCCGCGcGCucAGCCa -3'
miRNA:   3'- cCGUGCcgu-AGUCGGCGC-CGcuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 7072 0.67 0.428133
Target:  5'- aGGCaaagGCGGUAUUGGguUUGCGGUGucGAGCCg -3'
miRNA:   3'- -CCG----UGCCGUAGUC--GGCGCCGC--UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.