miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19705 5' -59.6 NC_004686.1 + 43751 1.11 0.000299
Target:  5'- gGCCGCCGCGCCAUCGGCGUCGAACUCg -3'
miRNA:   3'- -CGGCGGCGCGGUAGCCGCAGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 9162 0.78 0.089399
Target:  5'- aGCCGCCG-GCCGugagaUCGGuCGcCGAACUCg -3'
miRNA:   3'- -CGGCGGCgCGGU-----AGCC-GCaGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 1297 0.78 0.089399
Target:  5'- cGCCGCCGCGCCcgcaggaagUGGCGUUGggUg- -3'
miRNA:   3'- -CGGCGGCGCGGua-------GCCGCAGCuuGag -5'
19705 5' -59.6 NC_004686.1 + 44435 0.77 0.105388
Target:  5'- gGUCGCaaaGCaAUCGGCGUCGAACUCg -3'
miRNA:   3'- -CGGCGgcgCGgUAGCCGCAGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 38413 0.74 0.162023
Target:  5'- aUCGCCGCGggcaUCAUCGGCccCGGACUCg -3'
miRNA:   3'- cGGCGGCGC----GGUAGCCGcaGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 28249 0.74 0.172585
Target:  5'- cGCCGaCUucuggaacggucucgGCGUUGUCGGCGUCGuGCUCa -3'
miRNA:   3'- -CGGC-GG---------------CGCGGUAGCCGCAGCuUGAG- -5'
19705 5' -59.6 NC_004686.1 + 33461 0.73 0.184717
Target:  5'- aGCCGCgGCGCCGgggguuaGGCGggUGAGCUg -3'
miRNA:   3'- -CGGCGgCGCGGUag-----CCGCa-GCUUGAg -5'
19705 5' -59.6 NC_004686.1 + 52466 0.72 0.215611
Target:  5'- cGCCGCCGcCGCCAU-GGCGgcuucGCUCc -3'
miRNA:   3'- -CGGCGGC-GCGGUAgCCGCagcu-UGAG- -5'
19705 5' -59.6 NC_004686.1 + 5047 0.71 0.263582
Target:  5'- aUCGCUGgGCaauuCAUCGGCGUUGAcCUCu -3'
miRNA:   3'- cGGCGGCgCG----GUAGCCGCAGCUuGAG- -5'
19705 5' -59.6 NC_004686.1 + 25924 0.69 0.335274
Target:  5'- uCCaUCGCGCCAUCGGUgGUCG-ACUa -3'
miRNA:   3'- cGGcGGCGCGGUAGCCG-CAGCuUGAg -5'
19705 5' -59.6 NC_004686.1 + 4201 0.69 0.335274
Target:  5'- cCCaCUGCGCgGUCagGGUGUCGAugUCg -3'
miRNA:   3'- cGGcGGCGCGgUAG--CCGCAGCUugAG- -5'
19705 5' -59.6 NC_004686.1 + 4753 0.69 0.343179
Target:  5'- uGCC-CgGUGUCAUCGGUGUgcuguUGAACUCc -3'
miRNA:   3'- -CGGcGgCGCGGUAGCCGCA-----GCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 16998 0.69 0.343179
Target:  5'- gGCCGCCG-GCgGgUCGGCGUaaucaugggugCGGACUg -3'
miRNA:   3'- -CGGCGGCgCGgU-AGCCGCA-----------GCUUGAg -5'
19705 5' -59.6 NC_004686.1 + 6364 0.69 0.343179
Target:  5'- aGCCGuuGCGgCGUgCGGUGUCugcgucGCUCa -3'
miRNA:   3'- -CGGCggCGCgGUA-GCCGCAGcu----UGAG- -5'
19705 5' -59.6 NC_004686.1 + 33960 0.69 0.359389
Target:  5'- aCCGCCaGCGCCcgCGcCGUUGGuucuGCUCu -3'
miRNA:   3'- cGGCGG-CGCGGuaGCcGCAGCU----UGAG- -5'
19705 5' -59.6 NC_004686.1 + 12164 0.68 0.367693
Target:  5'- gGCCGCgGgGCCAgcggCGGCGuUCGcaaUCg -3'
miRNA:   3'- -CGGCGgCgCGGUa---GCCGC-AGCuugAG- -5'
19705 5' -59.6 NC_004686.1 + 21852 0.68 0.376127
Target:  5'- gGCgGCgGCuCCGgaCGGCGcUCGAACUCc -3'
miRNA:   3'- -CGgCGgCGcGGUa-GCCGC-AGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 10594 0.68 0.376127
Target:  5'- aGCCGCCGCGCa---GGuCGcCGAugcuuugggcgACUCa -3'
miRNA:   3'- -CGGCGGCGCGguagCC-GCaGCU-----------UGAG- -5'
19705 5' -59.6 NC_004686.1 + 21823 0.68 0.384691
Target:  5'- uGCgGgUGCGCC-UCGGCGgcgCGGGCg- -3'
miRNA:   3'- -CGgCgGCGCGGuAGCCGCa--GCUUGag -5'
19705 5' -59.6 NC_004686.1 + 6624 0.68 0.393383
Target:  5'- uGCCcCCGUGCCAUUGGUGUUucuGCa- -3'
miRNA:   3'- -CGGcGGCGCGGUAGCCGCAGcu-UGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.