miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19705 5' -59.6 NC_004686.1 + 1297 0.78 0.089399
Target:  5'- cGCCGCCGCGCCcgcaggaagUGGCGUUGggUg- -3'
miRNA:   3'- -CGGCGGCGCGGua-------GCCGCAGCuuGag -5'
19705 5' -59.6 NC_004686.1 + 2123 0.67 0.471159
Target:  5'- cGCCGCCcgucugggaacagucGCGCaacgCAUCGGCGUaagCGGcAUUCg -3'
miRNA:   3'- -CGGCGG---------------CGCG----GUAGCCGCA---GCU-UGAG- -5'
19705 5' -59.6 NC_004686.1 + 3735 0.67 0.438698
Target:  5'- aGCCGCCaUGgCggCGGCGgCGGACUg -3'
miRNA:   3'- -CGGCGGcGCgGuaGCCGCaGCUUGAg -5'
19705 5' -59.6 NC_004686.1 + 4201 0.69 0.335274
Target:  5'- cCCaCUGCGCgGUCagGGUGUCGAugUCg -3'
miRNA:   3'- cGGcGGCGCGgUAG--CCGCAGCUugAG- -5'
19705 5' -59.6 NC_004686.1 + 4753 0.69 0.343179
Target:  5'- uGCC-CgGUGUCAUCGGUGUgcuguUGAACUCc -3'
miRNA:   3'- -CGGcGgCGCGGUAGCCGCA-----GCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 5047 0.71 0.263582
Target:  5'- aUCGCUGgGCaauuCAUCGGCGUUGAcCUCu -3'
miRNA:   3'- cGGCGGCgCG----GUAGCCGCAGCUuGAG- -5'
19705 5' -59.6 NC_004686.1 + 5361 0.66 0.527103
Target:  5'- -aCGgauUCGaCGUCGUCGGCGUUGAAgUCc -3'
miRNA:   3'- cgGC---GGC-GCGGUAGCCGCAGCUUgAG- -5'
19705 5' -59.6 NC_004686.1 + 5515 0.67 0.42021
Target:  5'- uUCGCCG-GCCugaacgcggCGGUGUCGGACa- -3'
miRNA:   3'- cGGCGGCgCGGua-------GCCGCAGCUUGag -5'
19705 5' -59.6 NC_004686.1 + 6320 0.66 0.506807
Target:  5'- uUCGCCGCgGCCuucgucgcCGGCGagUCGggUUCc -3'
miRNA:   3'- cGGCGGCG-CGGua------GCCGC--AGCuuGAG- -5'
19705 5' -59.6 NC_004686.1 + 6364 0.69 0.343179
Target:  5'- aGCCGuuGCGgCGUgCGGUGUCugcgucGCUCa -3'
miRNA:   3'- -CGGCggCGCgGUA-GCCGCAGcu----UGAG- -5'
19705 5' -59.6 NC_004686.1 + 6624 0.68 0.393383
Target:  5'- uGCCcCCGUGCCAUUGGUGUUucuGCa- -3'
miRNA:   3'- -CGGcGGCGCGGUAGCCGCAGcu-UGag -5'
19705 5' -59.6 NC_004686.1 + 9162 0.78 0.089399
Target:  5'- aGCCGCCG-GCCGugagaUCGGuCGcCGAACUCg -3'
miRNA:   3'- -CGGCGGCgCGGU-----AGCC-GCaGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 9788 0.66 0.527103
Target:  5'- uGCCGCCacugcgguCGCCGcCGGCGUCcccACUg -3'
miRNA:   3'- -CGGCGGc-------GCGGUaGCCGCAGcu-UGAg -5'
19705 5' -59.6 NC_004686.1 + 10594 0.68 0.376127
Target:  5'- aGCCGCCGCGCa---GGuCGcCGAugcuuugggcgACUCa -3'
miRNA:   3'- -CGGCGGCGCGguagCC-GCaGCU-----------UGAG- -5'
19705 5' -59.6 NC_004686.1 + 12164 0.68 0.367693
Target:  5'- gGCCGCgGgGCCAgcggCGGCGuUCGcaaUCg -3'
miRNA:   3'- -CGGCGgCgCGGUa---GCCGC-AGCuugAG- -5'
19705 5' -59.6 NC_004686.1 + 16433 0.68 0.411145
Target:  5'- cGUCGCCGCGgCGUCcguguaggaGGCGccgucgUCGAGCa- -3'
miRNA:   3'- -CGGCGGCGCgGUAG---------CCGC------AGCUUGag -5'
19705 5' -59.6 NC_004686.1 + 16998 0.69 0.343179
Target:  5'- gGCCGCCG-GCgGgUCGGCGUaaucaugggugCGGACUg -3'
miRNA:   3'- -CGGCGGCgCGgU-AGCCGCA-----------GCUUGAg -5'
19705 5' -59.6 NC_004686.1 + 17447 0.67 0.438698
Target:  5'- gGCUuuGCgGCGCCAgucgUCGGUGU-GAACUUc -3'
miRNA:   3'- -CGG--CGgCGCGGU----AGCCGCAgCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 19456 0.68 0.402202
Target:  5'- -aCGaCCGUGCCgAUCGGCGUUuccacaaaGGACUUc -3'
miRNA:   3'- cgGC-GGCGCGG-UAGCCGCAG--------CUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 20951 0.66 0.486852
Target:  5'- cGCCuUCGCucaGCCAgcUCGGCG-CGAGuCUCa -3'
miRNA:   3'- -CGGcGGCG---CGGU--AGCCGCaGCUU-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.