miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19705 5' -59.6 NC_004686.1 + 26723 0.66 0.486852
Target:  5'- uGCUGUCGcCGUgAUCGGCGagaAACUCg -3'
miRNA:   3'- -CGGCGGC-GCGgUAGCCGCagcUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 5515 0.67 0.42021
Target:  5'- uUCGCCG-GCCugaacgcggCGGUGUCGGACa- -3'
miRNA:   3'- cGGCGGCgCGGua-------GCCGCAGCUUGag -5'
19705 5' -59.6 NC_004686.1 + 27546 0.67 0.429395
Target:  5'- uGCUGUCGCGCUugguAUCGGUgaucGUUGGGCg- -3'
miRNA:   3'- -CGGCGGCGCGG----UAGCCG----CAGCUUGag -5'
19705 5' -59.6 NC_004686.1 + 3735 0.67 0.438698
Target:  5'- aGCCGCCaUGgCggCGGCGgCGGACUg -3'
miRNA:   3'- -CGGCGGcGCgGuaGCCGCaGCUUGAg -5'
19705 5' -59.6 NC_004686.1 + 35316 0.67 0.438698
Target:  5'- gGCUGCCgGUGaCUAUgCGGUGUCGGAUg- -3'
miRNA:   3'- -CGGCGG-CGC-GGUA-GCCGCAGCUUGag -5'
19705 5' -59.6 NC_004686.1 + 38873 0.67 0.467276
Target:  5'- aGCCGCaGUGCCugcaGUgGGCGUUGAAg-- -3'
miRNA:   3'- -CGGCGgCGCGG----UAgCCGCAGCUUgag -5'
19705 5' -59.6 NC_004686.1 + 2123 0.67 0.471159
Target:  5'- cGCCGCCcgucugggaacagucGCGCaacgCAUCGGCGUaagCGGcAUUCg -3'
miRNA:   3'- -CGGCGG---------------CGCG----GUAGCCGCA---GCU-UGAG- -5'
19705 5' -59.6 NC_004686.1 + 38080 0.66 0.477014
Target:  5'- uGCCGCCGCaCCAUUGGgagaaCGAAC-Cg -3'
miRNA:   3'- -CGGCGGCGcGGUAGCCgca--GCUUGaG- -5'
19705 5' -59.6 NC_004686.1 + 31180 0.66 0.486852
Target:  5'- aGCCGgacacugguCCGCGCCAUuucgugCGGCcGUCGucGCUg -3'
miRNA:   3'- -CGGC---------GGCGCGGUA------GCCG-CAGCu-UGAg -5'
19705 5' -59.6 NC_004686.1 + 47335 0.68 0.401314
Target:  5'- aGCCGaaCCGCGCCAccgucgaGGCGugggcugagcagaUCGAACUg -3'
miRNA:   3'- -CGGC--GGCGCGGUag-----CCGC-------------AGCUUGAg -5'
19705 5' -59.6 NC_004686.1 + 21823 0.68 0.384691
Target:  5'- uGCgGgUGCGCC-UCGGCGgcgCGGGCg- -3'
miRNA:   3'- -CGgCgGCGCGGuAGCCGCa--GCUUGag -5'
19705 5' -59.6 NC_004686.1 + 10594 0.68 0.376127
Target:  5'- aGCCGCCGCGCa---GGuCGcCGAugcuuugggcgACUCa -3'
miRNA:   3'- -CGGCGGCGCGguagCC-GCaGCU-----------UGAG- -5'
19705 5' -59.6 NC_004686.1 + 9162 0.78 0.089399
Target:  5'- aGCCGCCG-GCCGugagaUCGGuCGcCGAACUCg -3'
miRNA:   3'- -CGGCGGCgCGGU-----AGCC-GCaGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 1297 0.78 0.089399
Target:  5'- cGCCGCCGCGCCcgcaggaagUGGCGUUGggUg- -3'
miRNA:   3'- -CGGCGGCGCGGua-------GCCGCAGCuuGag -5'
19705 5' -59.6 NC_004686.1 + 44435 0.77 0.105388
Target:  5'- gGUCGCaaaGCaAUCGGCGUCGAACUCg -3'
miRNA:   3'- -CGGCGgcgCGgUAGCCGCAGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 38413 0.74 0.162023
Target:  5'- aUCGCCGCGggcaUCAUCGGCccCGGACUCg -3'
miRNA:   3'- cGGCGGCGC----GGUAGCCGcaGCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 28249 0.74 0.172585
Target:  5'- cGCCGaCUucuggaacggucucgGCGUUGUCGGCGUCGuGCUCa -3'
miRNA:   3'- -CGGC-GG---------------CGCGGUAGCCGCAGCuUGAG- -5'
19705 5' -59.6 NC_004686.1 + 16998 0.69 0.343179
Target:  5'- gGCCGCCG-GCgGgUCGGCGUaaucaugggugCGGACUg -3'
miRNA:   3'- -CGGCGGCgCGgU-AGCCGCA-----------GCUUGAg -5'
19705 5' -59.6 NC_004686.1 + 12164 0.68 0.367693
Target:  5'- gGCCGCgGgGCCAgcggCGGCGuUCGcaaUCg -3'
miRNA:   3'- -CGGCGgCgCGGUa---GCCGC-AGCuugAG- -5'
19705 5' -59.6 NC_004686.1 + 21852 0.68 0.376127
Target:  5'- gGCgGCgGCuCCGgaCGGCGcUCGAACUCc -3'
miRNA:   3'- -CGgCGgCGcGGUa-GCCGC-AGCUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.