miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19709 5' -57.3 NC_004686.1 + 45879 1.12 0.000416
Target:  5'- cCCCGCUCCACCCACACACCCCAAUGCc -3'
miRNA:   3'- -GGGCGAGGUGGGUGUGUGGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 16632 0.8 0.094868
Target:  5'- aUCCGCUCCaccACCCACuccgggaguuucGCGCCCCGccucAUGCg -3'
miRNA:   3'- -GGGCGAGG---UGGGUG------------UGUGGGGU----UACG- -5'
19709 5' -57.3 NC_004686.1 + 36926 0.79 0.10899
Target:  5'- cCCCGCaCCGCCCuCACACCgCAacucGUGCa -3'
miRNA:   3'- -GGGCGaGGUGGGuGUGUGGgGU----UACG- -5'
19709 5' -57.3 NC_004686.1 + 34374 0.77 0.147245
Target:  5'- gCCCGCgCCGCCgagGCGCACCCgcaAGUGCg -3'
miRNA:   3'- -GGGCGaGGUGGg--UGUGUGGGg--UUACG- -5'
19709 5' -57.3 NC_004686.1 + 38422 0.77 0.151274
Target:  5'- aCCCGa---ACCCACAUACCCCucAUGCg -3'
miRNA:   3'- -GGGCgaggUGGGUGUGUGGGGu-UACG- -5'
19709 5' -57.3 NC_004686.1 + 29648 0.76 0.177611
Target:  5'- gCCGCcCCGCUUGCACAacuCUCCAGUGCa -3'
miRNA:   3'- gGGCGaGGUGGGUGUGU---GGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 37963 0.75 0.207943
Target:  5'- aCCUGCccgUCACCCGCaACGCCCCcAUGg -3'
miRNA:   3'- -GGGCGa--GGUGGGUG-UGUGGGGuUACg -5'
19709 5' -57.3 NC_004686.1 + 8689 0.73 0.254601
Target:  5'- uCCCGCUCCGCCgaagucucccguuCGCACcgAUCCCGccggaucgcacGUGCa -3'
miRNA:   3'- -GGGCGAGGUGG-------------GUGUG--UGGGGU-----------UACG- -5'
19709 5' -57.3 NC_004686.1 + 35100 0.72 0.296252
Target:  5'- aCCCGUUCCAUcgCCACAcCACCgUAGgugGCa -3'
miRNA:   3'- -GGGCGAGGUG--GGUGU-GUGGgGUUa--CG- -5'
19709 5' -57.3 NC_004686.1 + 6021 0.72 0.318605
Target:  5'- uUCCGC-CCACCC-CugAUCCaCAcgGCg -3'
miRNA:   3'- -GGGCGaGGUGGGuGugUGGG-GUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 6399 0.71 0.326332
Target:  5'- cCUCGCUCCAUCCcgACACCCagcgggauuCGAUGUa -3'
miRNA:   3'- -GGGCGAGGUGGGugUGUGGG---------GUUACG- -5'
19709 5' -57.3 NC_004686.1 + 27429 0.71 0.367034
Target:  5'- aCCCGCcgCauaaaACCCGCGCAucaccgcgccCCCCAA-GCg -3'
miRNA:   3'- -GGGCGa-Gg----UGGGUGUGU----------GGGGUUaCG- -5'
19709 5' -57.3 NC_004686.1 + 17293 0.7 0.402023
Target:  5'- aCCCGC----CCCACACACCCaacucguuGUGCu -3'
miRNA:   3'- -GGGCGagguGGGUGUGUGGGgu------UACG- -5'
19709 5' -57.3 NC_004686.1 + 52063 0.7 0.402023
Target:  5'- aCgGCUCCACCgGCAacgcuugacCACCCCAc-GCc -3'
miRNA:   3'- gGgCGAGGUGGgUGU---------GUGGGGUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 14724 0.7 0.411095
Target:  5'- uUCCGCUCC-CCCGC-CAacaaCCCGAguUGUu -3'
miRNA:   3'- -GGGCGAGGuGGGUGuGUg---GGGUU--ACG- -5'
19709 5' -57.3 NC_004686.1 + 50544 0.69 0.420294
Target:  5'- --aGCUCCagagggauacugACCUGCACACCCCAAc-- -3'
miRNA:   3'- gggCGAGG------------UGGGUGUGUGGGGUUacg -5'
19709 5' -57.3 NC_004686.1 + 45263 0.69 0.429615
Target:  5'- gCCgGCacaagcauUUCACCCACGCugCCCGGaGUu -3'
miRNA:   3'- -GGgCG--------AGGUGGGUGUGugGGGUUaCG- -5'
19709 5' -57.3 NC_004686.1 + 38071 0.69 0.439058
Target:  5'- gCCCGUUCCugCCGC-CGCaCCAuUGg -3'
miRNA:   3'- -GGGCGAGGugGGUGuGUGgGGUuACg -5'
19709 5' -57.3 NC_004686.1 + 21761 0.69 0.455377
Target:  5'- aCCGUUCUccgaagagaacgucACCCGCACcaacGCCCCAAccccUGUc -3'
miRNA:   3'- gGGCGAGG--------------UGGGUGUG----UGGGGUU----ACG- -5'
19709 5' -57.3 NC_004686.1 + 33185 0.69 0.458291
Target:  5'- uCCCaaGCgugaaCCACCCGgcCACACCCCAcaagaucguUGCu -3'
miRNA:   3'- -GGG--CGa----GGUGGGU--GUGUGGGGUu--------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.