miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19709 5' -57.3 NC_004686.1 + 1820 0.66 0.603025
Target:  5'- uUuuGCcCUGCCCgACGCcgaACUCCAGUGCc -3'
miRNA:   3'- -GggCGaGGUGGG-UGUG---UGGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 4851 0.66 0.624552
Target:  5'- gCUGC-CCACCU--GCACUUCGAUGUa -3'
miRNA:   3'- gGGCGaGGUGGGugUGUGGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 6021 0.72 0.318605
Target:  5'- uUCCGC-CCACCC-CugAUCCaCAcgGCg -3'
miRNA:   3'- -GGGCGaGGUGGGuGugUGGG-GUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 6399 0.71 0.326332
Target:  5'- cCUCGCUCCAUCCcgACACCCagcgggauuCGAUGUa -3'
miRNA:   3'- -GGGCGAGGUGGGugUGUGGG---------GUUACG- -5'
19709 5' -57.3 NC_004686.1 + 7121 0.67 0.570934
Target:  5'- uCgCGCUCUcCCuCGCugACCaCCAggGCg -3'
miRNA:   3'- -GgGCGAGGuGG-GUGugUGG-GGUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 8551 0.67 0.539272
Target:  5'- gCCGCacaaaCACCCGCG-GCUCCGGUGUc -3'
miRNA:   3'- gGGCGag---GUGGGUGUgUGGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 8689 0.73 0.254601
Target:  5'- uCCCGCUCCGCCgaagucucccguuCGCACcgAUCCCGccggaucgcacGUGCa -3'
miRNA:   3'- -GGGCGAGGUGG-------------GUGUG--UGGGGU-----------UACG- -5'
19709 5' -57.3 NC_004686.1 + 8848 0.66 0.63533
Target:  5'- aUCUGCUCaGCCCACGC-CUCgAcgGUg -3'
miRNA:   3'- -GGGCGAGgUGGGUGUGuGGGgUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 10214 0.66 0.624552
Target:  5'- aUCCGuUUCCG-CCGCACACCUCAc--- -3'
miRNA:   3'- -GGGC-GAGGUgGGUGUGUGGGGUuacg -5'
19709 5' -57.3 NC_004686.1 + 10638 0.66 0.603025
Target:  5'- uUCGCU-CGCCCaAUGCGCCCCucucugGCu -3'
miRNA:   3'- gGGCGAgGUGGG-UGUGUGGGGuua---CG- -5'
19709 5' -57.3 NC_004686.1 + 10896 0.67 0.539272
Target:  5'- cCCCgGCgggguacacgCCGCCCACAacaACUCCGG-GCa -3'
miRNA:   3'- -GGG-CGa---------GGUGGGUGUg--UGGGGUUaCG- -5'
19709 5' -57.3 NC_004686.1 + 12292 0.66 0.624552
Target:  5'- -gUGCUCCGCgCugGCugUCCAcggAUGUg -3'
miRNA:   3'- ggGCGAGGUGgGugUGugGGGU---UACG- -5'
19709 5' -57.3 NC_004686.1 + 12824 0.68 0.505164
Target:  5'- aUCCGCgauaucUCCAUCCACgggcagaacgaugaACACCUCugcGUGCa -3'
miRNA:   3'- -GGGCG------AGGUGGGUG--------------UGUGGGGu--UACG- -5'
19709 5' -57.3 NC_004686.1 + 14380 0.67 0.549766
Target:  5'- uCUC-CUUCaACCCGgACACCCCGAgaGCa -3'
miRNA:   3'- -GGGcGAGG-UGGGUgUGUGGGGUUa-CG- -5'
19709 5' -57.3 NC_004686.1 + 14491 0.68 0.518497
Target:  5'- aCCCGCUaCCugCCAgGCgAUCCgGAgccgugGCg -3'
miRNA:   3'- -GGGCGA-GGugGGUgUG-UGGGgUUa-----CG- -5'
19709 5' -57.3 NC_004686.1 + 14724 0.7 0.411095
Target:  5'- uUCCGCUCC-CCCGC-CAacaaCCCGAguUGUu -3'
miRNA:   3'- -GGGCGAGGuGGGUGuGUg---GGGUU--ACG- -5'
19709 5' -57.3 NC_004686.1 + 16632 0.8 0.094868
Target:  5'- aUCCGCUCCaccACCCACuccgggaguuucGCGCCCCGccucAUGCg -3'
miRNA:   3'- -GGGCGAGG---UGGGUG------------UGUGGGGU----UACG- -5'
19709 5' -57.3 NC_004686.1 + 16882 0.66 0.613781
Target:  5'- aCCCGuCUUCGCgCggGCACGCUgCAcgGUGCg -3'
miRNA:   3'- -GGGC-GAGGUGgG--UGUGUGGgGU--UACG- -5'
19709 5' -57.3 NC_004686.1 + 17293 0.7 0.402023
Target:  5'- aCCCGC----CCCACACACCCaacucguuGUGCu -3'
miRNA:   3'- -GGGCGagguGGGUGUGUGGGgu------UACG- -5'
19709 5' -57.3 NC_004686.1 + 19631 0.68 0.518497
Target:  5'- aCCCGa--CAguugaCACACACUCCGAUGCu -3'
miRNA:   3'- -GGGCgagGUgg---GUGUGUGGGGUUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.