miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19709 5' -57.3 NC_004686.1 + 12292 0.66 0.624552
Target:  5'- -gUGCUCCGCgCugGCugUCCAcggAUGUg -3'
miRNA:   3'- ggGCGAGGUGgGugUGugGGGU---UACG- -5'
19709 5' -57.3 NC_004686.1 + 10896 0.67 0.539272
Target:  5'- cCCCgGCgggguacacgCCGCCCACAacaACUCCGG-GCa -3'
miRNA:   3'- -GGG-CGa---------GGUGGGUGUg--UGGGGUUaCG- -5'
19709 5' -57.3 NC_004686.1 + 38439 0.67 0.549766
Target:  5'- aCUCGC-CgCACCC-CACGCCCag--GCg -3'
miRNA:   3'- -GGGCGaG-GUGGGuGUGUGGGguuaCG- -5'
19709 5' -57.3 NC_004686.1 + 55807 0.67 0.549766
Target:  5'- aCCGCaucgaagCCACCauCAC-CACCCCcgcAUGCu -3'
miRNA:   3'- gGGCGa------GGUGG--GUGuGUGGGGu--UACG- -5'
19709 5' -57.3 NC_004686.1 + 49733 0.67 0.56987
Target:  5'- aCCGCUgagagCCGgCCACGCggguuauggcgauGCCCCGAUccaGCu -3'
miRNA:   3'- gGGCGA-----GGUgGGUGUG-------------UGGGGUUA---CG- -5'
19709 5' -57.3 NC_004686.1 + 29740 0.67 0.581593
Target:  5'- aUCGCaUgUAUCCGCGCACCCaaccacGUGCg -3'
miRNA:   3'- gGGCG-AgGUGGGUGUGUGGGgu----UACG- -5'
19709 5' -57.3 NC_004686.1 + 55878 0.67 0.592293
Target:  5'- gUCGCcaUCCAaccaaCCACAUACCCgAcAUGCu -3'
miRNA:   3'- gGGCG--AGGUg----GGUGUGUGGGgU-UACG- -5'
19709 5' -57.3 NC_004686.1 + 33437 0.67 0.592293
Target:  5'- gCCGCguucgacuaCAuCCCAgACgGCCCCAcgGCa -3'
miRNA:   3'- gGGCGag-------GU-GGGUgUG-UGGGGUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 56018 0.66 0.613781
Target:  5'- gUCGC-CCACCCGCccgGCACCCgcCAAcccgGCc -3'
miRNA:   3'- gGGCGaGGUGGGUG---UGUGGG--GUUa---CG- -5'
19709 5' -57.3 NC_004686.1 + 14491 0.68 0.518497
Target:  5'- aCCCGCUaCCugCCAgGCgAUCCgGAgccgugGCg -3'
miRNA:   3'- -GGGCGA-GGugGGUgUG-UGGGgUUa-----CG- -5'
19709 5' -57.3 NC_004686.1 + 32048 0.68 0.508228
Target:  5'- aCCGCUuucccacagCCAUgCGCACGCUUCAAcUGCu -3'
miRNA:   3'- gGGCGA---------GGUGgGUGUGUGGGGUU-ACG- -5'
19709 5' -57.3 NC_004686.1 + 12824 0.68 0.505164
Target:  5'- aUCCGCgauaucUCCAUCCACgggcagaacgaugaACACCUCugcGUGCa -3'
miRNA:   3'- -GGGCG------AGGUGGGUG--------------UGUGGGGu--UACG- -5'
19709 5' -57.3 NC_004686.1 + 29648 0.76 0.177611
Target:  5'- gCCGCcCCGCUUGCACAacuCUCCAGUGCa -3'
miRNA:   3'- gGGCGaGGUGGGUGUGU---GGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 37963 0.75 0.207943
Target:  5'- aCCUGCccgUCACCCGCaACGCCCCcAUGg -3'
miRNA:   3'- -GGGCGa--GGUGGGUG-UGUGGGGuUACg -5'
19709 5' -57.3 NC_004686.1 + 38071 0.69 0.439058
Target:  5'- gCCCGUUCCugCCGC-CGCaCCAuUGg -3'
miRNA:   3'- -GGGCGAGGugGGUGuGUGgGGUuACg -5'
19709 5' -57.3 NC_004686.1 + 21761 0.69 0.455377
Target:  5'- aCCGUUCUccgaagagaacgucACCCGCACcaacGCCCCAAccccUGUc -3'
miRNA:   3'- gGGCGAGG--------------UGGGUGUG----UGGGGUU----ACG- -5'
19709 5' -57.3 NC_004686.1 + 33185 0.69 0.458291
Target:  5'- uCCCaaGCgugaaCCACCCGgcCACACCCCAcaagaucguUGCu -3'
miRNA:   3'- -GGG--CGa----GGUGGGU--GUGUGGGGUu--------ACG- -5'
19709 5' -57.3 NC_004686.1 + 26356 0.69 0.468075
Target:  5'- cCUgGC-CCACCCcC-CGCCCCGAccUGCc -3'
miRNA:   3'- -GGgCGaGGUGGGuGuGUGGGGUU--ACG- -5'
19709 5' -57.3 NC_004686.1 + 54968 0.69 0.468075
Target:  5'- aCCGCagcgCCGCCUACAacCGCgCCAccGCa -3'
miRNA:   3'- gGGCGa---GGUGGGUGU--GUGgGGUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 46854 0.68 0.498047
Target:  5'- uCCCGCuUCCGCCCGagcCAcCGCCCgGAc-- -3'
miRNA:   3'- -GGGCG-AGGUGGGU---GU-GUGGGgUUacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.