miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19711 3' -52.4 NC_004686.1 + 40843 0.66 0.893879
Target:  5'- uGGAUGUGGUgAACAaaGCGuUGUCgCg -3'
miRNA:   3'- -CCUAUACCAgUUGUgcCGUcGCAGgG- -5'
19711 3' -52.4 NC_004686.1 + 21014 0.66 0.893879
Target:  5'- cGAUcaGG-CAGCGCaauauccguaucGGCGGCGUaCCCa -3'
miRNA:   3'- cCUAuaCCaGUUGUG------------CCGUCGCA-GGG- -5'
19711 3' -52.4 NC_004686.1 + 47305 0.66 0.886554
Target:  5'- aGGA---GGUCGGCGCGGaUGGCcccCCCg -3'
miRNA:   3'- -CCUauaCCAGUUGUGCC-GUCGca-GGG- -5'
19711 3' -52.4 NC_004686.1 + 48957 0.66 0.886554
Target:  5'- cGGAUGccGGUgAGCACacccGgGGCGUCCg -3'
miRNA:   3'- -CCUAUa-CCAgUUGUGc---CgUCGCAGGg -5'
19711 3' -52.4 NC_004686.1 + 56002 0.66 0.885058
Target:  5'- cGAUGUGGUCAaccucgaacgaACGCGGaugaggcgcacgAGCGUCa- -3'
miRNA:   3'- cCUAUACCAGU-----------UGUGCCg-----------UCGCAGgg -5'
19711 3' -52.4 NC_004686.1 + 41149 0.66 0.863016
Target:  5'- gGGAUgcgAUGGUguACGCcuuguuGGCAcCGUCCUg -3'
miRNA:   3'- -CCUA---UACCAguUGUG------CCGUcGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 11766 0.67 0.846085
Target:  5'- ---cGUGGagAACGCgGGCAGCG-CCg -3'
miRNA:   3'- ccuaUACCagUUGUG-CCGUCGCaGGg -5'
19711 3' -52.4 NC_004686.1 + 21281 0.67 0.846085
Target:  5'- gGGGUcUGuGUCGgugaacuuuggGCAgGGCA-CGUCCCa -3'
miRNA:   3'- -CCUAuAC-CAGU-----------UGUgCCGUcGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 15546 0.67 0.837272
Target:  5'- cGAUAU--UCAguGCAgUGGCAGCGuUCCCg -3'
miRNA:   3'- cCUAUAccAGU--UGU-GCCGUCGC-AGGG- -5'
19711 3' -52.4 NC_004686.1 + 41721 0.67 0.837272
Target:  5'- aGGUAgcgGGUgCAcuGCACGGacaguuCGGCGUCCUc -3'
miRNA:   3'- cCUAUa--CCA-GU--UGUGCC------GUCGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 40302 0.67 0.82824
Target:  5'- -cGUGUGGUCGGCACuucauCGGCGUCa- -3'
miRNA:   3'- ccUAUACCAGUUGUGcc---GUCGCAGgg -5'
19711 3' -52.4 NC_004686.1 + 37046 0.67 0.82824
Target:  5'- uGGAUccGUGGUUGGCGCGccuGgAGCGUCaggCCa -3'
miRNA:   3'- -CCUA--UACCAGUUGUGC---CgUCGCAG---GG- -5'
19711 3' -52.4 NC_004686.1 + 22766 0.67 0.818997
Target:  5'- gGGAUGUaGUCgAACGCGGC-GCGUaUCUg -3'
miRNA:   3'- -CCUAUAcCAG-UUGUGCCGuCGCA-GGG- -5'
19711 3' -52.4 NC_004686.1 + 19049 0.67 0.818997
Target:  5'- cGGGUcgGGUgcUGGC-CGGCAGgCGUCUUu -3'
miRNA:   3'- -CCUAuaCCA--GUUGuGCCGUC-GCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 11873 0.67 0.818997
Target:  5'- gGGAcAUGcagCAGCACGGCA-UGUCCg -3'
miRNA:   3'- -CCUaUACca-GUUGUGCCGUcGCAGGg -5'
19711 3' -52.4 NC_004686.1 + 50638 0.67 0.818997
Target:  5'- -----cGGUCGACGCGGUcacAGCcUCCg -3'
miRNA:   3'- ccuauaCCAGUUGUGCCG---UCGcAGGg -5'
19711 3' -52.4 NC_004686.1 + 43762 0.67 0.809554
Target:  5'- uGAUGUGGcaUCGGCGgaGGCuGCuGUCCUa -3'
miRNA:   3'- cCUAUACC--AGUUGUg-CCGuCG-CAGGG- -5'
19711 3' -52.4 NC_004686.1 + 103 0.68 0.799921
Target:  5'- uGGUcUGGUCAgagguGCACGGCGucGCGggUCCa -3'
miRNA:   3'- cCUAuACCAGU-----UGUGCCGU--CGCa-GGG- -5'
19711 3' -52.4 NC_004686.1 + 4655 0.68 0.79011
Target:  5'- aGGGUGuUGGUg---GCGGCGuugagcGCGUCCCa -3'
miRNA:   3'- -CCUAU-ACCAguugUGCCGU------CGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 16994 0.68 0.78013
Target:  5'- cGGg---GGUCAggACACGGCcggucauGCGcCCCa -3'
miRNA:   3'- -CCuauaCCAGU--UGUGCCGu------CGCaGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.