miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19712 3' -56.8 NC_004686.1 + 38909 0.66 0.690811
Target:  5'- aGGUUcaggaUCUGCGGauGAucGCCGUGaUCACCg -3'
miRNA:   3'- -CCAA-----AGGCGUCggCU--UGGCGC-GGUGG- -5'
19712 3' -56.8 NC_004686.1 + 12144 0.66 0.689748
Target:  5'- aGUUUCgGC-GCCGGcggucagGCCGCGggGCCa -3'
miRNA:   3'- cCAAAGgCGuCGGCU-------UGGCGCggUGG- -5'
19712 3' -56.8 NC_004686.1 + 44473 0.66 0.669465
Target:  5'- gGGUgcCCGCcauguGaCCGuuaguuCCGCuGCCACCg -3'
miRNA:   3'- -CCAaaGGCGu----C-GGCuu----GGCG-CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 28920 0.66 0.669465
Target:  5'- cGGUcacgUUgGCGGUCGAAUCGauugGCCGCg -3'
miRNA:   3'- -CCAa---AGgCGUCGGCUUGGCg---CGGUGg -5'
19712 3' -56.8 NC_004686.1 + 3904 0.66 0.665177
Target:  5'- uGGcaUUCGCAGCCGAggggGCCGaucugcaacgcugGCUGCCu -3'
miRNA:   3'- -CCaaAGGCGUCGGCU----UGGCg------------CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 18467 0.66 0.652288
Target:  5'- cGGUga-CGCAGaacgCGAcgcuggccaucaccuAUCGUGCCGCCa -3'
miRNA:   3'- -CCAaagGCGUCg---GCU---------------UGGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 50638 0.66 0.647985
Target:  5'- cGGUcgaCGCGGUCacagccuCCGgGCCGCCa -3'
miRNA:   3'- -CCAaagGCGUCGGcuu----GGCgCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 16456 0.66 0.647985
Target:  5'- aGGcg-CCGUcGUCGAGCaggCGgGCCGCCu -3'
miRNA:   3'- -CCaaaGGCGuCGGCUUG---GCgCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 50275 0.66 0.647985
Target:  5'- cGUUUCgccgGCAGCCGAua---GCCACCg -3'
miRNA:   3'- cCAAAGg---CGUCGGCUuggcgCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 56032 0.66 0.647985
Target:  5'- cGGcacCCGCcaacCCG-GCCGCGUCGCCu -3'
miRNA:   3'- -CCaaaGGCGuc--GGCuUGGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 5548 0.66 0.647985
Target:  5'- ---gUCCGUGGCgGcccggaggcuguGACCGCGUCgACCg -3'
miRNA:   3'- ccaaAGGCGUCGgC------------UUGGCGCGG-UGG- -5'
19712 3' -56.8 NC_004686.1 + 35166 0.66 0.646909
Target:  5'- cGGUggguaCGCcGCCGAuacggauAUUGCGCUGCCu -3'
miRNA:   3'- -CCAaag--GCGuCGGCU-------UGGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 30097 0.66 0.637219
Target:  5'- aGUcgCCGUGGCCGGAguUC-UGCCACCc -3'
miRNA:   3'- cCAaaGGCGUCGGCUU--GGcGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 20874 0.66 0.637219
Target:  5'- ----gCCGCAuCCGAcACCGCauaGUCACCg -3'
miRNA:   3'- ccaaaGGCGUcGGCU-UGGCG---CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 2100 0.66 0.637219
Target:  5'- cGGUguaUGCGGCgauGACCGCucGCCGCCc -3'
miRNA:   3'- -CCAaagGCGUCGgc-UUGGCG--CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 13670 0.66 0.637219
Target:  5'- gGGUgacUgUGCAGuuGAuucaGCCGCGgCGCUg -3'
miRNA:   3'- -CCAa--AgGCGUCggCU----UGGCGCgGUGG- -5'
19712 3' -56.8 NC_004686.1 + 20647 0.66 0.637219
Target:  5'- ---aUCCcuucggGCAGCCcauaUGCGCCACCg -3'
miRNA:   3'- ccaaAGG------CGUCGGcuugGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 4917 0.66 0.637219
Target:  5'- --gUUCCaGCGGUCccaucCCGCGCCGCa -3'
miRNA:   3'- ccaAAGG-CGUCGGcuu--GGCGCGGUGg -5'
19712 3' -56.8 NC_004686.1 + 52186 0.67 0.619988
Target:  5'- ---aUCCGCAGCgGAaguggacccugcccaAcCCGUGCC-CCg -3'
miRNA:   3'- ccaaAGGCGUCGgCU---------------U-GGCGCGGuGG- -5'
19712 3' -56.8 NC_004686.1 + 31598 0.67 0.615683
Target:  5'- ---aUCCGCAugcGCauacACaCGCGCCACCu -3'
miRNA:   3'- ccaaAGGCGU---CGgcu-UG-GCGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.