miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 3' -63.6 NC_004687.1 + 149740 1.05 0.00102
Target:  5'- gACCAGGACCCACCCCACGCCCCAGAUg -3'
miRNA:   3'- -UGGUCCUGGGUGGGGUGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 144995 0.8 0.074028
Target:  5'- gACCAGGGCCagcuccgCACCCCG-GCCCCAGAg -3'
miRNA:   3'- -UGGUCCUGG-------GUGGGGUgCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 39485 0.75 0.161759
Target:  5'- uGCCGGuGGCCCGCCCC-CGCCCgCcGGUg -3'
miRNA:   3'- -UGGUC-CUGGGUGGGGuGCGGG-GuCUA- -5'
19737 3' -63.6 NC_004687.1 + 35509 0.75 0.165752
Target:  5'- aGCCAGGGCCCGgucgaUCCACuGCCCCAGc- -3'
miRNA:   3'- -UGGUCCUGGGUg----GGGUG-CGGGGUCua -5'
19737 3' -63.6 NC_004687.1 + 38942 0.74 0.174004
Target:  5'- cGCCGGGugcacGCCCACCCCGCGCaCCAu-- -3'
miRNA:   3'- -UGGUCC-----UGGGUGGGGUGCGgGGUcua -5'
19737 3' -63.6 NC_004687.1 + 121873 0.73 0.210762
Target:  5'- aACCGGGAUCgUGCCCuCGCGCCuCCAGGc -3'
miRNA:   3'- -UGGUCCUGG-GUGGG-GUGCGG-GGUCUa -5'
19737 3' -63.6 NC_004687.1 + 48896 0.73 0.210762
Target:  5'- aACCAGGGCCCGUCCCGgGCgCCGGu- -3'
miRNA:   3'- -UGGUCCUGGGUGGGGUgCGgGGUCua -5'
19737 3' -63.6 NC_004687.1 + 99464 0.73 0.215801
Target:  5'- aACCaugAGGGCCCGUCUCGCGCCCgAGAa -3'
miRNA:   3'- -UGG---UCCUGGGUGGGGUGCGGGgUCUa -5'
19737 3' -63.6 NC_004687.1 + 155365 0.72 0.24256
Target:  5'- uCCGGGacuGCCCACCCCGC-CCCCGc-- -3'
miRNA:   3'- uGGUCC---UGGGUGGGGUGcGGGGUcua -5'
19737 3' -63.6 NC_004687.1 + 16548 0.72 0.248233
Target:  5'- cCCAGG-CCCGCgCCGCuGCCCUGGAc -3'
miRNA:   3'- uGGUCCuGGGUGgGGUG-CGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 39886 0.72 0.259907
Target:  5'- uCCAGGACCCGgUggaCAUGUCCCAGAUc -3'
miRNA:   3'- uGGUCCUGGGUgGg--GUGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 79579 0.72 0.26591
Target:  5'- uCCAGaACCUgaucGCCgCCGCGCCCCGGGUc -3'
miRNA:   3'- uGGUCcUGGG----UGG-GGUGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 37606 0.71 0.278253
Target:  5'- cACCAuGGCCCGCgCCCaggcugcuGCGCUCCAGAa -3'
miRNA:   3'- -UGGUcCUGGGUG-GGG--------UGCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 55652 0.71 0.289099
Target:  5'- -aCAGGAguuucacaccguuuCCCACCUCugGCCCCuGAc -3'
miRNA:   3'- ugGUCCU--------------GGGUGGGGugCGGGGuCUa -5'
19737 3' -63.6 NC_004687.1 + 95951 0.71 0.291047
Target:  5'- aACCAGGACUUGCCCUcgGgCCCAGAg -3'
miRNA:   3'- -UGGUCCUGGGUGGGGugCgGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 18173 0.71 0.304298
Target:  5'- gGCCGGGGCUCGCUgagCUACGCCCCc--- -3'
miRNA:   3'- -UGGUCCUGGGUGG---GGUGCGGGGucua -5'
19737 3' -63.6 NC_004687.1 + 107084 0.7 0.309044
Target:  5'- aGCCuGGACCCGCuggCCUACGCcgaggaccuccuggCCCAGGUg -3'
miRNA:   3'- -UGGuCCUGGGUG---GGGUGCG--------------GGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 95074 0.7 0.311095
Target:  5'- gGCCAGGguGCCCugCgCCACGaUCCAGAa -3'
miRNA:   3'- -UGGUCC--UGGGugG-GGUGCgGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 87436 0.7 0.318007
Target:  5'- aGCCGGGcuuGCCgGgCUCACGaCCCCGGAUg -3'
miRNA:   3'- -UGGUCC---UGGgUgGGGUGC-GGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 149050 0.7 0.318007
Target:  5'- cACCAGaacGAaCCGCCCCGCaGCCCCGGc- -3'
miRNA:   3'- -UGGUC---CUgGGUGGGGUG-CGGGGUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.