miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 3' -63.6 NC_004687.1 + 150960 0.67 0.470409
Target:  5'- cGCCgAGGAUCUgcguccggaACCCCcuGCGCCaCCGGAg -3'
miRNA:   3'- -UGG-UCCUGGG---------UGGGG--UGCGG-GGUCUa -5'
19737 3' -63.6 NC_004687.1 + 116718 0.69 0.377416
Target:  5'- cACCcGGACCCACUCgCG-GCCCCGGc- -3'
miRNA:   3'- -UGGuCCUGGGUGGG-GUgCGGGGUCua -5'
19737 3' -63.6 NC_004687.1 + 17460 0.69 0.385348
Target:  5'- cGCCAGGACCCACUacgCCAacgaugGCCaCCuGAUg -3'
miRNA:   3'- -UGGUCCUGGGUGG---GGUg-----CGG-GGuCUA- -5'
19737 3' -63.6 NC_004687.1 + 85025 0.69 0.40154
Target:  5'- cGCC-GGACCCGgCCaC-CGUCCCGGAg -3'
miRNA:   3'- -UGGuCCUGGGUgGG-GuGCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 36712 0.68 0.409797
Target:  5'- cGCgAGGACgCCgaugGCCCgCAgGCCCCGGGc -3'
miRNA:   3'- -UGgUCCUG-GG----UGGG-GUgCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 49010 0.68 0.417317
Target:  5'- cACCcGcGCCCGCCCCGgcgccacccaugcCGCCCCAGc- -3'
miRNA:   3'- -UGGuCcUGGGUGGGGU-------------GCGGGGUCua -5'
19737 3' -63.6 NC_004687.1 + 103258 0.68 0.443852
Target:  5'- gACCAGG-UCCGCuacgCCCGCGCCCU-GAUc -3'
miRNA:   3'- -UGGUCCuGGGUG----GGGUGCGGGGuCUA- -5'
19737 3' -63.6 NC_004687.1 + 94398 0.68 0.443852
Target:  5'- cGCCGGaGcucuGCCCGCCCCA-GCCCUgcgAGAUc -3'
miRNA:   3'- -UGGUC-C----UGGGUGGGGUgCGGGG---UCUA- -5'
19737 3' -63.6 NC_004687.1 + 145214 0.67 0.461465
Target:  5'- gGCCAGGGCgCCgACCCCaACGacaCCUGGGc -3'
miRNA:   3'- -UGGUCCUG-GG-UGGGG-UGCg--GGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 53418 0.69 0.369594
Target:  5'- gGCCAucGCCCGCCCC-CGUCCCAccGAg -3'
miRNA:   3'- -UGGUccUGGGUGGGGuGCGGGGU--CUa -5'
19737 3' -63.6 NC_004687.1 + 109182 0.69 0.369594
Target:  5'- uCCGGGGCCUGCagaagaCCUACGgCCCGGAg -3'
miRNA:   3'- uGGUCCUGGGUG------GGGUGCgGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 149050 0.7 0.318007
Target:  5'- cACCAGaacGAaCCGCCCCGCaGCCCCGGc- -3'
miRNA:   3'- -UGGUC---CUgGGUGGGGUG-CGGGGUCua -5'
19737 3' -63.6 NC_004687.1 + 48896 0.73 0.210762
Target:  5'- aACCAGGGCCCGUCCCGgGCgCCGGu- -3'
miRNA:   3'- -UGGUCCUGGGUGGGGUgCGgGGUCua -5'
19737 3' -63.6 NC_004687.1 + 99464 0.73 0.215801
Target:  5'- aACCaugAGGGCCCGUCUCGCGCCCgAGAa -3'
miRNA:   3'- -UGG---UCCUGGGUGGGGUGCGGGgUCUa -5'
19737 3' -63.6 NC_004687.1 + 155365 0.72 0.24256
Target:  5'- uCCGGGacuGCCCACCCCGC-CCCCGc-- -3'
miRNA:   3'- uGGUCC---UGGGUGGGGUGcGGGGUcua -5'
19737 3' -63.6 NC_004687.1 + 16548 0.72 0.248233
Target:  5'- cCCAGG-CCCGCgCCGCuGCCCUGGAc -3'
miRNA:   3'- uGGUCCuGGGUGgGGUG-CGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 79579 0.72 0.26591
Target:  5'- uCCAGaACCUgaucGCCgCCGCGCCCCGGGUc -3'
miRNA:   3'- uGGUCcUGGG----UGG-GGUGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 37606 0.71 0.278253
Target:  5'- cACCAuGGCCCGCgCCCaggcugcuGCGCUCCAGAa -3'
miRNA:   3'- -UGGUcCUGGGUG-GGG--------UGCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 18173 0.71 0.304298
Target:  5'- gGCCGGGGCUCGCUgagCUACGCCCCc--- -3'
miRNA:   3'- -UGGUCCUGGGUGG---GGUGCGGGGucua -5'
19737 3' -63.6 NC_004687.1 + 107084 0.7 0.309044
Target:  5'- aGCCuGGACCCGCuggCCUACGCcgaggaccuccuggCCCAGGUg -3'
miRNA:   3'- -UGGuCCUGGGUG---GGGUGCG--------------GGGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.