miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 3' -63.6 NC_004687.1 + 7740 0.67 0.507025
Target:  5'- aACCAGGGCCgCuauGCCUCGCuGCCCagcgaGGAg -3'
miRNA:   3'- -UGGUCCUGG-G---UGGGGUG-CGGGg----UCUa -5'
19737 3' -63.6 NC_004687.1 + 8630 0.66 0.529568
Target:  5'- cACCGGGucgACCCucACCCgcagaccgacgacaaCACGCCCCAaGAc -3'
miRNA:   3'- -UGGUCC---UGGG--UGGG---------------GUGCGGGGU-CUa -5'
19737 3' -63.6 NC_004687.1 + 9941 0.67 0.461465
Target:  5'- uCCGGG-CCUGCCggGCGCUCCAGGUa -3'
miRNA:   3'- uGGUCCuGGGUGGggUGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 11261 0.69 0.369594
Target:  5'- gGCCGGGauagcuGCCCugCCCGgCGUgCCAGGc -3'
miRNA:   3'- -UGGUCC------UGGGugGGGU-GCGgGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 11402 0.7 0.339431
Target:  5'- uGCC-GGugUggugaGCCaCCACGCCCCAGAUc -3'
miRNA:   3'- -UGGuCCugGg----UGG-GGUGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 15163 0.66 0.5448
Target:  5'- cACCAGGACCgcguCACCCgAgGCCUugucaCGGAa -3'
miRNA:   3'- -UGGUCCUGG----GUGGGgUgCGGG-----GUCUa -5'
19737 3' -63.6 NC_004687.1 + 16548 0.72 0.248233
Target:  5'- cCCAGG-CCCGCgCCGCuGCCCUGGAc -3'
miRNA:   3'- uGGUCCuGGGUGgGGUG-CGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 17460 0.69 0.385348
Target:  5'- cGCCAGGACCCACUacgCCAacgaugGCCaCCuGAUg -3'
miRNA:   3'- -UGGUCCUGGGUGG---GGUg-----CGG-GGuCUA- -5'
19737 3' -63.6 NC_004687.1 + 18173 0.71 0.304298
Target:  5'- gGCCGGGGCUCGCUgagCUACGCCCCc--- -3'
miRNA:   3'- -UGGUCCUGGGUGG---GGUGCGGGGucua -5'
19737 3' -63.6 NC_004687.1 + 18635 0.69 0.385348
Target:  5'- uGCCGGGACCCGaagaCCCAgGCCUUg--- -3'
miRNA:   3'- -UGGUCCUGGGUg---GGGUgCGGGGucua -5'
19737 3' -63.6 NC_004687.1 + 18738 0.67 0.479441
Target:  5'- gGCCGaGACCCugcgcaagGCCUCACGCgCCGGGc -3'
miRNA:   3'- -UGGUcCUGGG--------UGGGGUGCGgGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 21020 0.67 0.474012
Target:  5'- gGCCAGGGCCCACCagagguaguaggccgCaCugGUCCCGc-- -3'
miRNA:   3'- -UGGUCCUGGGUGG---------------G-GugCGGGGUcua -5'
19737 3' -63.6 NC_004687.1 + 27289 0.66 0.525784
Target:  5'- cGCCgAGGACaagcacuaUCGCCCCgACGUCCCGGc- -3'
miRNA:   3'- -UGG-UCCUG--------GGUGGGG-UGCGGGGUCua -5'
19737 3' -63.6 NC_004687.1 + 27407 0.66 0.554392
Target:  5'- gACgAGGACCUcaaGCCCaACGCCuuuCCGGAg -3'
miRNA:   3'- -UGgUCCUGGG---UGGGgUGCGG---GGUCUa -5'
19737 3' -63.6 NC_004687.1 + 29587 0.67 0.501452
Target:  5'- uCCAGG-CUCuggACCCCACGCCuccgcccgugcuggaCCAGAUu -3'
miRNA:   3'- uGGUCCuGGG---UGGGGUGCGG---------------GGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 31658 0.66 0.573717
Target:  5'- uCCAGGaaGCCCAUCgCggucagcaGCGUCCCGGAg -3'
miRNA:   3'- uGGUCC--UGGGUGGgG--------UGCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 35509 0.75 0.165752
Target:  5'- aGCCAGGGCCCGgucgaUCCACuGCCCCAGc- -3'
miRNA:   3'- -UGGUCCUGGGUg----GGGUG-CGGGGUCua -5'
19737 3' -63.6 NC_004687.1 + 36712 0.68 0.409797
Target:  5'- cGCgAGGACgCCgaugGCCCgCAgGCCCCGGGc -3'
miRNA:   3'- -UGgUCCUG-GG----UGGG-GUgCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 37606 0.71 0.278253
Target:  5'- cACCAuGGCCCGCgCCCaggcugcuGCGCUCCAGAa -3'
miRNA:   3'- -UGGUcCUGGGUG-GGG--------UGCGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 38942 0.74 0.174004
Target:  5'- cGCCGGGugcacGCCCACCCCGCGCaCCAu-- -3'
miRNA:   3'- -UGGUCC-----UGGGUGGGGUGCGgGGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.