miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 5' -54.3 NC_004687.1 + 149774 1.11 0.002997
Target:  5'- cGCAUGGUGAACUUGGCAUGCGCGCCGu -3'
miRNA:   3'- -CGUACCACUUGAACCGUACGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 104323 0.73 0.613037
Target:  5'- uGCgAUGGUGAuCUcguugGGCA-GUGCGCCGa -3'
miRNA:   3'- -CG-UACCACUuGAa----CCGUaCGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 84274 0.73 0.644172
Target:  5'- uGCAUGGUGAugguCUUgGGCAgcgucauCGUGCCGa -3'
miRNA:   3'- -CGUACCACUu---GAA-CCGUac-----GCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 49469 0.73 0.654541
Target:  5'- gGCAUGGUGAACc-GGCG-GUG-GCCGg -3'
miRNA:   3'- -CGUACCACUUGaaCCGUaCGCgCGGC- -5'
19737 5' -54.3 NC_004687.1 + 7807 0.72 0.705934
Target:  5'- gGCGuUGGUGcGCgaggggucGGCGUGCGCGCgGu -3'
miRNA:   3'- -CGU-ACCACuUGaa------CCGUACGCGCGgC- -5'
19737 5' -54.3 NC_004687.1 + 116982 0.71 0.726107
Target:  5'- cGCggGGUGGGCgugcacccGGCggGCGUGCUGg -3'
miRNA:   3'- -CGuaCCACUUGaa------CCGuaCGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 70921 0.71 0.755717
Target:  5'- cGCGUaGGUGAcgcGCUgcucGGCgGUGCGCGgCGg -3'
miRNA:   3'- -CGUA-CCACU---UGAa---CCG-UACGCGCgGC- -5'
19737 5' -54.3 NC_004687.1 + 44732 0.71 0.765375
Target:  5'- cGCAUGGUGcGGCa-GGCA-GCGCGaCCa -3'
miRNA:   3'- -CGUACCAC-UUGaaCCGUaCGCGC-GGc -5'
19737 5' -54.3 NC_004687.1 + 110650 0.7 0.784317
Target:  5'- gGCGUGGUGGACggagccggagUGGCcgagcUGCccgacgGCGCCGc -3'
miRNA:   3'- -CGUACCACUUGa---------ACCGu----ACG------CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 35571 0.7 0.784317
Target:  5'- ---cGGUGAACUUGGCGU-CG-GCCu -3'
miRNA:   3'- cguaCCACUUGAACCGUAcGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 63621 0.7 0.788041
Target:  5'- ---cGGUGGACUggcucucauggccgcUGGCGacaGCGCGCUGg -3'
miRNA:   3'- cguaCCACUUGA---------------ACCGUa--CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 76282 0.7 0.793582
Target:  5'- gGCcgGGcgccGAACUUGcGCAUGaugucgGCGCCGg -3'
miRNA:   3'- -CGuaCCa---CUUGAAC-CGUACg-----CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 118139 0.7 0.802697
Target:  5'- gGCGUGGUGGACgc-GCugaucaagGUGgGCGCCu -3'
miRNA:   3'- -CGUACCACUUGaacCG--------UACgCGCGGc -5'
19737 5' -54.3 NC_004687.1 + 120497 0.7 0.802697
Target:  5'- cGCuUGGUcaggccGAacuGCUUGGCgaugccugccGUGCGCGCCa -3'
miRNA:   3'- -CGuACCA------CU---UGAACCG----------UACGCGCGGc -5'
19737 5' -54.3 NC_004687.1 + 134296 0.7 0.811652
Target:  5'- ---cGGUGAGCccgaccaggaUGGCGUGCgGCGUCGa -3'
miRNA:   3'- cguaCCACUUGa---------ACCGUACG-CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 67973 0.69 0.820441
Target:  5'- aCggGGUGAACagGGCGcucagcgGCGCGUCGa -3'
miRNA:   3'- cGuaCCACUUGaaCCGUa------CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 6187 0.69 0.845717
Target:  5'- gGCGUggGGUGggUccUGGuCGUGCGCGaCCa -3'
miRNA:   3'- -CGUA--CCACuuGa-ACC-GUACGCGC-GGc -5'
19737 5' -54.3 NC_004687.1 + 38572 0.69 0.853753
Target:  5'- cGCAUGGccAGCUUGGU--GCcCGCCGg -3'
miRNA:   3'- -CGUACCacUUGAACCGuaCGcGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 121172 0.69 0.853753
Target:  5'- ---cGGUGAACUccUGGCcaccaGCGCuGCCGu -3'
miRNA:   3'- cguaCCACUUGA--ACCGua---CGCG-CGGC- -5'
19737 5' -54.3 NC_004687.1 + 123322 0.69 0.861583
Target:  5'- cGCAuUGGUGcGCUUGGUgcGCagcaGCGUCGg -3'
miRNA:   3'- -CGU-ACCACuUGAACCGuaCG----CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.