miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 5' -54.3 NC_004687.1 + 6187 0.69 0.845717
Target:  5'- gGCGUggGGUGggUccUGGuCGUGCGCGaCCa -3'
miRNA:   3'- -CGUA--CCACuuGa-ACC-GUACGCGC-GGc -5'
19737 5' -54.3 NC_004687.1 + 7807 0.72 0.705934
Target:  5'- gGCGuUGGUGcGCgaggggucGGCGUGCGCGCgGu -3'
miRNA:   3'- -CGU-ACCACuUGaa------CCGUACGCGCGgC- -5'
19737 5' -54.3 NC_004687.1 + 10530 0.66 0.955222
Target:  5'- --uUGGUGAAgUUGGCGU-CG-GCCa -3'
miRNA:   3'- cguACCACUUgAACCGUAcGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 13090 0.67 0.927359
Target:  5'- aGCAcGGUGAGC-UGGCcguaguuguugGUGCccauGUGCCGc -3'
miRNA:   3'- -CGUaCCACUUGaACCG-----------UACG----CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 22221 0.68 0.869199
Target:  5'- aCAUGGUGGGCcaGGguUGCGgcaGCCu -3'
miRNA:   3'- cGUACCACUUGaaCCguACGCg--CGGc -5'
19737 5' -54.3 NC_004687.1 + 26598 0.67 0.927359
Target:  5'- cGCcgGGUGAcgACggcaaaGGCuggGaCGCGCCGu -3'
miRNA:   3'- -CGuaCCACU--UGaa----CCGua-C-GCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 27170 0.67 0.932611
Target:  5'- cGCGUGGUGug---GGCcgGUGacuaCGCCGa -3'
miRNA:   3'- -CGUACCACuugaaCCGuaCGC----GCGGC- -5'
19737 5' -54.3 NC_004687.1 + 33620 0.67 0.910128
Target:  5'- uCAUGGUGGcCcacGGUGUGgGCGCCu -3'
miRNA:   3'- cGUACCACUuGaa-CCGUACgCGCGGc -5'
19737 5' -54.3 NC_004687.1 + 34167 0.67 0.910128
Target:  5'- cGCAggUGGUGucCUgcgGGUcuuggGCGUGCCGg -3'
miRNA:   3'- -CGU--ACCACuuGAa--CCGua---CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 35571 0.7 0.784317
Target:  5'- ---cGGUGAACUUGGCGU-CG-GCCu -3'
miRNA:   3'- cguaCCACUUGAACCGUAcGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 36294 0.66 0.937618
Target:  5'- aGCcgGGcGAACUUGGUgAUG-GCGuuGg -3'
miRNA:   3'- -CGuaCCaCUUGAACCG-UACgCGCggC- -5'
19737 5' -54.3 NC_004687.1 + 38572 0.69 0.853753
Target:  5'- cGCAUGGccAGCUUGGU--GCcCGCCGg -3'
miRNA:   3'- -CGUACCacUUGAACCGuaCGcGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 44732 0.71 0.765375
Target:  5'- cGCAUGGUGcGGCa-GGCA-GCGCGaCCa -3'
miRNA:   3'- -CGUACCAC-UUGaaCCGUaCGCGC-GGc -5'
19737 5' -54.3 NC_004687.1 + 45820 0.68 0.890714
Target:  5'- ---cGGcGGGCggcGGCAUccaGCGCGCCGg -3'
miRNA:   3'- cguaCCaCUUGaa-CCGUA---CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 48241 0.66 0.94238
Target:  5'- aCGUGGccGGACgccgGGCcgGUGCGCaCGu -3'
miRNA:   3'- cGUACCa-CUUGaa--CCGuaCGCGCG-GC- -5'
19737 5' -54.3 NC_004687.1 + 49469 0.73 0.654541
Target:  5'- gGCAUGGUGAACc-GGCG-GUG-GCCGg -3'
miRNA:   3'- -CGUACCACUUGaaCCGUaCGCgCGGC- -5'
19737 5' -54.3 NC_004687.1 + 49595 0.66 0.94238
Target:  5'- ---cGGUGAACUcgGGCcccgGCGCCGa -3'
miRNA:   3'- cguaCCACUUGAa-CCGuacgCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 54822 0.66 0.937618
Target:  5'- gGCggGGUGAAgUguccGGUGUGCG-GCCa -3'
miRNA:   3'- -CGuaCCACUUgAa---CCGUACGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 58022 0.67 0.903896
Target:  5'- aGUcgGGUG----UGGCcgGaCGCGCCGa -3'
miRNA:   3'- -CGuaCCACuugaACCGuaC-GCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 63621 0.7 0.788041
Target:  5'- ---cGGUGGACUggcucucauggccgcUGGCGacaGCGCGCUGg -3'
miRNA:   3'- cguaCCACUUGA---------------ACCGUa--CGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.