Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19737 | 5' | -54.3 | NC_004687.1 | + | 116982 | 0.71 | 0.726107 |
Target: 5'- cGCggGGUGGGCgugcacccGGCggGCGUGCUGg -3' miRNA: 3'- -CGuaCCACUUGaa------CCGuaCGCGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 136711 | 0.66 | 0.951179 |
Target: 5'- cCGUGGUGGcCUgucaGGUcgacagaaGCGCGCCGa -3' miRNA: 3'- cGUACCACUuGAa---CCGua------CGCGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 114174 | 0.66 | 0.951179 |
Target: 5'- aCAUGGcaacUGGuUUUGGCGcgaugaaGCGCGCCGu -3' miRNA: 3'- cGUACC----ACUuGAACCGUa------CGCGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 49595 | 0.66 | 0.94238 |
Target: 5'- ---cGGUGAACUcgGGCcccgGCGCCGa -3' miRNA: 3'- cguaCCACUUGAa-CCGuacgCGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 112597 | 0.66 | 0.937129 |
Target: 5'- ---cGGUGAGCUgguugggUGGCAaGCGCgaGCUGu -3' miRNA: 3'- cguaCCACUUGA-------ACCGUaCGCG--CGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 100740 | 0.66 | 0.937129 |
Target: 5'- ---cGGccaUGAGCUUGGCGUagucgaaGCGCuuGCCGa -3' miRNA: 3'- cguaCC---ACUUGAACCGUA-------CGCG--CGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 27170 | 0.67 | 0.932611 |
Target: 5'- cGCGUGGUGug---GGCcgGUGacuaCGCCGa -3' miRNA: 3'- -CGUACCACuugaaCCGuaCGC----GCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 33620 | 0.67 | 0.910128 |
Target: 5'- uCAUGGUGGcCcacGGUGUGgGCGCCu -3' miRNA: 3'- cGUACCACUuGaa-CCGUACgCGCGGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 118655 | 0.67 | 0.903896 |
Target: 5'- uGCGaGGUGAucaaGCUcGGCGgcgGCGgCGCCu -3' miRNA: 3'- -CGUaCCACU----UGAaCCGUa--CGC-GCGGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 44732 | 0.71 | 0.765375 |
Target: 5'- cGCAUGGUGcGGCa-GGCA-GCGCGaCCa -3' miRNA: 3'- -CGUACCAC-UUGaaCCGUaCGCGC-GGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 118139 | 0.7 | 0.802697 |
Target: 5'- gGCGUGGUGGACgc-GCugaucaagGUGgGCGCCu -3' miRNA: 3'- -CGUACCACUUGaacCG--------UACgCGCGGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 6187 | 0.69 | 0.845717 |
Target: 5'- gGCGUggGGUGggUccUGGuCGUGCGCGaCCa -3' miRNA: 3'- -CGUA--CCACuuGa-ACC-GUACGCGC-GGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 78922 | 0.68 | 0.88377 |
Target: 5'- aCGUGGUGAugUggaccGGCAacggcaccguggUGCacGCGCCGc -3' miRNA: 3'- cGUACCACUugAa----CCGU------------ACG--CGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 45820 | 0.68 | 0.890714 |
Target: 5'- ---cGGcGGGCggcGGCAUccaGCGCGCCGg -3' miRNA: 3'- cguaCCaCUUGaa-CCGUA---CGCGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 58022 | 0.67 | 0.903896 |
Target: 5'- aGUcgGGUG----UGGCcgGaCGCGCCGa -3' miRNA: 3'- -CGuaCCACuugaACCGuaC-GCGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 149774 | 1.11 | 0.002997 |
Target: 5'- cGCAUGGUGAACUUGGCAUGCGCGCCGu -3' miRNA: 3'- -CGUACCACUUGAACCGUACGCGCGGC- -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 135563 | 0.66 | 0.951179 |
Target: 5'- gGCuUGGUGAAC---GCAUGCGgGUCc -3' miRNA: 3'- -CGuACCACUUGaacCGUACGCgCGGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 142315 | 0.66 | 0.9469 |
Target: 5'- aGCGcGGUcggGGACUUGGacuggaCGUGCGCgGCCu -3' miRNA: 3'- -CGUaCCA---CUUGAACC------GUACGCG-CGGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 127181 | 0.66 | 0.951179 |
Target: 5'- cGguUGGccuUGAGCgugGGCA-GCGCgGCCa -3' miRNA: 3'- -CguACC---ACUUGaa-CCGUaCGCG-CGGc -5' |
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19737 | 5' | -54.3 | NC_004687.1 | + | 48241 | 0.66 | 0.94238 |
Target: 5'- aCGUGGccGGACgccgGGCcgGUGCGCaCGu -3' miRNA: 3'- cGUACCa-CUUGaa--CCGuaCGCGCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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