miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 5' -61.4 NC_004687.1 + 149121 1.08 0.00118
Target:  5'- gGCGCUCACCGUGCCGCGAGGCAGCGUu -3'
miRNA:   3'- -CGCGAGUGGCACGGCGCUCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 37680 0.79 0.118161
Target:  5'- gGCGC-CGCCGUGCCGcCGAGGCcaaccgccAGCGc -3'
miRNA:   3'- -CGCGaGUGGCACGGC-GCUCCG--------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 138546 0.78 0.144312
Target:  5'- -aGCUCGCCGuUGUCGCGAuagugcaccGGCAGCGg -3'
miRNA:   3'- cgCGAGUGGC-ACGGCGCU---------CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 114961 0.77 0.159286
Target:  5'- cUGCUCGCCGUGCCccGCGAggacgcGGCAGCa- -3'
miRNA:   3'- cGCGAGUGGCACGG--CGCU------CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 12084 0.76 0.197245
Target:  5'- aGCGCUCACCucacagggcgGUGCgcaucaagaacaGCGAGGCGGUGUa -3'
miRNA:   3'- -CGCGAGUGG----------CACGg-----------CGCUCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 23895 0.76 0.198194
Target:  5'- -aGCaCACCGUGCugCGCGAGGaCGGCGUg -3'
miRNA:   3'- cgCGaGUGGCACG--GCGCUCC-GUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 25441 0.76 0.202995
Target:  5'- gGUGCgUCGCCGUGCgUGCGAccugcGGCAGCGc -3'
miRNA:   3'- -CGCG-AGUGGCACG-GCGCU-----CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 78428 0.74 0.250882
Target:  5'- aGCGCUCGgccuucCCGgGCCGCuacgccgcacagGAGGCGGCGg -3'
miRNA:   3'- -CGCGAGU------GGCaCGGCG------------CUCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 84978 0.74 0.268801
Target:  5'- uGCGCUCACCGagccGCCGCGcaccgccGaGCAGCGc -3'
miRNA:   3'- -CGCGAGUGGCa---CGGCGCu------C-CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 9417 0.74 0.268801
Target:  5'- gGCuCUCGCCGgGCCGgGuGGCGGUGUa -3'
miRNA:   3'- -CGcGAGUGGCaCGGCgCuCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 94514 0.73 0.287089
Target:  5'- uUGUUCGCCGUGCCGaugaCGAGGUcgcccuuGGCGUc -3'
miRNA:   3'- cGCGAGUGGCACGGC----GCUCCG-------UCGCA- -5'
19738 5' -61.4 NC_004687.1 + 109976 0.71 0.38981
Target:  5'- uCGC-CGCCGUG-CGCGGGGcCAGUGg -3'
miRNA:   3'- cGCGaGUGGCACgGCGCUCC-GUCGCa -5'
19738 5' -61.4 NC_004687.1 + 134414 0.71 0.397951
Target:  5'- cUGCUCGCCcaGCCGgGugcGGGCGGCGa -3'
miRNA:   3'- cGCGAGUGGcaCGGCgC---UCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 113241 0.71 0.414557
Target:  5'- gGUGCUCuCgGUGUCGCccGGCAGCGc -3'
miRNA:   3'- -CGCGAGuGgCACGGCGcuCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 12237 0.7 0.440247
Target:  5'- gGCcCUCACCGUugGCCGCGAccgGGguGaCGUg -3'
miRNA:   3'- -CGcGAGUGGCA--CGGCGCU---CCguC-GCA- -5'
19738 5' -61.4 NC_004687.1 + 154672 0.7 0.449009
Target:  5'- aGCGC-CACUccgGCUGCucGGCAGCGUg -3'
miRNA:   3'- -CGCGaGUGGca-CGGCGcuCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 79106 0.7 0.449009
Target:  5'- gGCGCcgggCACCGUGgcaCCGgGucuGGGCGGCGg -3'
miRNA:   3'- -CGCGa---GUGGCAC---GGCgC---UCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 155235 0.7 0.449009
Target:  5'- aGCGCUCgaaGCCGaucacGCaGCGGGGCGGCu- -3'
miRNA:   3'- -CGCGAG---UGGCa----CGgCGCUCCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 44925 0.7 0.457867
Target:  5'- cGCGUUCucCCG-GUCGCGGGuGUAGCGc -3'
miRNA:   3'- -CGCGAGu-GGCaCGGCGCUC-CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 10328 0.7 0.457867
Target:  5'- cGUGUUCACCG-G-UGCG-GGCAGCGg -3'
miRNA:   3'- -CGCGAGUGGCaCgGCGCuCCGUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.