miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 5' -61.4 NC_004687.1 + 2776 0.67 0.619415
Target:  5'- gGUGCUgGCC-UGCCGCaccgcgcccGGCGGCGa -3'
miRNA:   3'- -CGCGAgUGGcACGGCGcu-------CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 3364 0.66 0.668698
Target:  5'- cGCGCaUCACCuUGcCCGCGAacGGCgaGGCa- -3'
miRNA:   3'- -CGCG-AGUGGcAC-GGCGCU--CCG--UCGca -5'
19738 5' -61.4 NC_004687.1 + 6861 0.68 0.541341
Target:  5'- aGCGaccaGCCGggGCUGCGGGGCGGUu- -3'
miRNA:   3'- -CGCgag-UGGCa-CGGCGCUCCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 7926 0.66 0.658867
Target:  5'- -aGCUgACCGacuacaaccUGCCGCGucccGGCGGCu- -3'
miRNA:   3'- cgCGAgUGGC---------ACGGCGCu---CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 9417 0.74 0.268801
Target:  5'- gGCuCUCGCCGgGCCGgGuGGCGGUGUa -3'
miRNA:   3'- -CGcGAGUGGCaCGGCgCuCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 10328 0.7 0.457867
Target:  5'- cGUGUUCACCG-G-UGCG-GGCAGCGg -3'
miRNA:   3'- -CGCGAGUGGCaCgGCGCuCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 12084 0.76 0.197245
Target:  5'- aGCGCUCACCucacagggcgGUGCgcaucaagaacaGCGAGGCGGUGUa -3'
miRNA:   3'- -CGCGAGUGG----------CACGg-----------CGCUCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 12237 0.7 0.440247
Target:  5'- gGCcCUCACCGUugGCCGCGAccgGGguGaCGUg -3'
miRNA:   3'- -CGcGAGUGGCA--CGGCGCU---CCguC-GCA- -5'
19738 5' -61.4 NC_004687.1 + 20371 0.66 0.668698
Target:  5'- uGCGUUCACCaagcccGCCGCccacGGCGGCa- -3'
miRNA:   3'- -CGCGAGUGGca----CGGCGcu--CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 23895 0.76 0.198194
Target:  5'- -aGCaCACCGUGCugCGCGAGGaCGGCGUg -3'
miRNA:   3'- cgCGaGUGGCACG--GCGCUCC-GUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 24903 0.67 0.599715
Target:  5'- gGCuGCaaccaUCGCCGc-CCGCGAGGCuGCGa -3'
miRNA:   3'- -CG-CG-----AGUGGCacGGCGCUCCGuCGCa -5'
19738 5' -61.4 NC_004687.1 + 25441 0.76 0.202995
Target:  5'- gGUGCgUCGCCGUGCgUGCGAccugcGGCAGCGc -3'
miRNA:   3'- -CGCG-AGUGGCACG-GCGCU-----CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 27552 0.69 0.522279
Target:  5'- cGCuaCUCGCCGUggagggcaacgGUCGCGGcGGCGGCGa -3'
miRNA:   3'- -CGc-GAGUGGCA-----------CGGCGCU-CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 37680 0.79 0.118161
Target:  5'- gGCGC-CGCCGUGCCGcCGAGGCcaaccgccAGCGc -3'
miRNA:   3'- -CGCGaGUGGCACGGC-GCUCCG--------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 40272 0.66 0.649015
Target:  5'- cGgGCUCGuaG-GCCaGCGAGGaCAGCGc -3'
miRNA:   3'- -CgCGAGUggCaCGG-CGCUCC-GUCGCa -5'
19738 5' -61.4 NC_004687.1 + 41353 0.66 0.649015
Target:  5'- cGCGggCAUCGUG-CGCGAGGUcGCa- -3'
miRNA:   3'- -CGCgaGUGGCACgGCGCUCCGuCGca -5'
19738 5' -61.4 NC_004687.1 + 41929 0.66 0.658867
Target:  5'- uGCGCUCuGCCGaUGCCGaacAGGCcaagcagaccGGCGg -3'
miRNA:   3'- -CGCGAG-UGGC-ACGGCgc-UCCG----------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 44755 0.67 0.629282
Target:  5'- gGUGaacaUCACCGgacgggcGCCGCGccGCAGCGc -3'
miRNA:   3'- -CGCg---AGUGGCa------CGGCGCucCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 44925 0.7 0.457867
Target:  5'- cGCGUUCucCCG-GUCGCGGGuGUAGCGc -3'
miRNA:   3'- -CGCGAGu-GGCaCGGCGCUC-CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 49406 0.68 0.580103
Target:  5'- cGCaGCUCAUCGgggucgauguUGCCGCGccGGUAGCa- -3'
miRNA:   3'- -CG-CGAGUGGC----------ACGGCGCu-CCGUCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.